Hb_000580_040

Information

Type -
Description -
Location Contig580: 23878-24583
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49825: 19530-23224
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000580_040 0.0 - - -
2 Hb_173423_010 0.0897552711 - - conserved hypothetical protein [Ricinus communis]
3 Hb_043950_010 0.1224160991 - - PREDICTED: uncharacterized protein LOC102619199, partial [Citrus sinensis]
4 Hb_007545_160 0.1279725784 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
5 Hb_004410_060 0.142532331 - - -
6 Hb_124976_010 0.1537640801 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
7 Hb_019859_030 0.158114774 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
8 Hb_007139_010 0.1582956026 - - hypothetical protein POPTR_0016s134801g, partial [Populus trichocarpa]
9 Hb_012815_020 0.1587549984 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
10 Hb_000078_040 0.1679108545 - - PREDICTED: uncharacterized protein LOC104907366 [Beta vulgaris subsp. vulgaris]
11 Hb_000833_080 0.1699021938 - - PREDICTED: uncharacterized protein LOC105789525 [Gossypium raimondii]
12 Hb_022348_020 0.1815374167 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
13 Hb_003581_040 0.1830772141 - - hypothetical protein PHAVU_002G080900g [Phaseolus vulgaris]
14 Hb_002871_200 0.183861329 - - -
15 Hb_000696_320 0.1906905774 - - PREDICTED: uncharacterized protein LOC104884717 [Beta vulgaris subsp. vulgaris]
16 Hb_078466_020 0.2039387509 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
17 Hb_003185_060 0.2088432496 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Amborella trichopoda]
18 Hb_080147_010 0.2300622155 - - -
19 Hb_006183_010 0.2310090297 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_012733_080 0.2316746956 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000580_040 Hb_000580_040 Hb_173423_010 Hb_173423_010 Hb_000580_040--Hb_173423_010 Hb_043950_010 Hb_043950_010 Hb_000580_040--Hb_043950_010 Hb_007545_160 Hb_007545_160 Hb_000580_040--Hb_007545_160 Hb_004410_060 Hb_004410_060 Hb_000580_040--Hb_004410_060 Hb_124976_010 Hb_124976_010 Hb_000580_040--Hb_124976_010 Hb_019859_030 Hb_019859_030 Hb_000580_040--Hb_019859_030 Hb_000833_080 Hb_000833_080 Hb_173423_010--Hb_000833_080 Hb_000696_320 Hb_000696_320 Hb_173423_010--Hb_000696_320 Hb_173423_010--Hb_043950_010 Hb_173423_010--Hb_007545_160 Hb_173423_010--Hb_004410_060 Hb_043950_010--Hb_007545_160 Hb_043950_010--Hb_004410_060 Hb_043950_010--Hb_124976_010 Hb_043950_010--Hb_019859_030 Hb_007139_010 Hb_007139_010 Hb_043950_010--Hb_007139_010 Hb_012815_020 Hb_012815_020 Hb_043950_010--Hb_012815_020 Hb_007545_160--Hb_004410_060 Hb_007545_160--Hb_124976_010 Hb_007545_160--Hb_019859_030 Hb_007545_160--Hb_007139_010 Hb_007545_160--Hb_012815_020 Hb_004410_060--Hb_124976_010 Hb_004410_060--Hb_019859_030 Hb_004410_060--Hb_007139_010 Hb_004410_060--Hb_012815_020 Hb_000078_040 Hb_000078_040 Hb_004410_060--Hb_000078_040 Hb_124976_010--Hb_019859_030 Hb_124976_010--Hb_007139_010 Hb_124976_010--Hb_012815_020 Hb_124976_010--Hb_000078_040 Hb_022348_020 Hb_022348_020 Hb_124976_010--Hb_022348_020 Hb_019859_030--Hb_007139_010 Hb_019859_030--Hb_012815_020 Hb_019859_030--Hb_000078_040 Hb_019859_030--Hb_022348_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 509.129 0 0 0 1512.82
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 61.636 0

CAGE analysis