Hb_173423_010

Information

Type -
Description -
Location Contig173423: 2907-4053
Sequence    

Annotation

kegg
ID rcu:RCOM_1359380
description hypothetical protein
nr
ID XP_002521191.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S5C2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1359380 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_173423_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000580_040 0.0897552711 - - -
3 Hb_000833_080 0.1489537014 - - PREDICTED: uncharacterized protein LOC105789525 [Gossypium raimondii]
4 Hb_000696_320 0.1575777528 - - PREDICTED: uncharacterized protein LOC104884717 [Beta vulgaris subsp. vulgaris]
5 Hb_043950_010 0.1661017863 - - PREDICTED: uncharacterized protein LOC102619199, partial [Citrus sinensis]
6 Hb_007545_160 0.1907202148 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
7 Hb_004410_060 0.2150060492 - - -
8 Hb_124976_010 0.2298793175 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
9 Hb_019859_030 0.2352599184 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
10 Hb_007139_010 0.2354801804 - - hypothetical protein POPTR_0016s134801g, partial [Populus trichocarpa]
11 Hb_012815_020 0.2360386439 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_045527_010 0.2419163484 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
13 Hb_000078_040 0.2468808265 - - PREDICTED: uncharacterized protein LOC104907366 [Beta vulgaris subsp. vulgaris]
14 Hb_001125_020 0.2496701096 - - hypothetical protein B456_001G219500 [Gossypium raimondii]
15 Hb_004650_090 0.2571690945 - - -
16 Hb_022348_020 0.2622695372 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_003581_040 0.2639671803 - - hypothetical protein PHAVU_002G080900g [Phaseolus vulgaris]
18 Hb_002871_200 0.2648290009 - - -
19 Hb_057486_010 0.265105101 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
20 Hb_003185_060 0.2688272621 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Amborella trichopoda]

Gene co-expression network

sample Hb_173423_010 Hb_173423_010 Hb_000580_040 Hb_000580_040 Hb_173423_010--Hb_000580_040 Hb_000833_080 Hb_000833_080 Hb_173423_010--Hb_000833_080 Hb_000696_320 Hb_000696_320 Hb_173423_010--Hb_000696_320 Hb_043950_010 Hb_043950_010 Hb_173423_010--Hb_043950_010 Hb_007545_160 Hb_007545_160 Hb_173423_010--Hb_007545_160 Hb_004410_060 Hb_004410_060 Hb_173423_010--Hb_004410_060 Hb_000580_040--Hb_043950_010 Hb_000580_040--Hb_007545_160 Hb_000580_040--Hb_004410_060 Hb_124976_010 Hb_124976_010 Hb_000580_040--Hb_124976_010 Hb_019859_030 Hb_019859_030 Hb_000580_040--Hb_019859_030 Hb_000833_080--Hb_000696_320 Hb_000833_080--Hb_043950_010 Hb_000833_080--Hb_007545_160 Hb_000833_080--Hb_000580_040 Hb_001125_020 Hb_001125_020 Hb_000833_080--Hb_001125_020 Hb_000696_320--Hb_043950_010 Hb_000696_320--Hb_001125_020 Hb_000696_320--Hb_007545_160 Hb_000696_320--Hb_000580_040 Hb_043950_010--Hb_007545_160 Hb_043950_010--Hb_004410_060 Hb_043950_010--Hb_124976_010 Hb_043950_010--Hb_019859_030 Hb_007139_010 Hb_007139_010 Hb_043950_010--Hb_007139_010 Hb_012815_020 Hb_012815_020 Hb_043950_010--Hb_012815_020 Hb_007545_160--Hb_004410_060 Hb_007545_160--Hb_124976_010 Hb_007545_160--Hb_019859_030 Hb_007545_160--Hb_007139_010 Hb_007545_160--Hb_012815_020 Hb_004410_060--Hb_124976_010 Hb_004410_060--Hb_019859_030 Hb_004410_060--Hb_007139_010 Hb_004410_060--Hb_012815_020 Hb_000078_040 Hb_000078_040 Hb_004410_060--Hb_000078_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.118181 0 0 0 0.582624
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0305017 0

CAGE analysis