Hb_010024_010

Information

Type -
Description -
Location Contig10024: 6968-7737
Sequence    

Annotation

kegg
ID rcu:RCOM_0136880
description Ran GTPase binding protein, putative
nr
ID XP_002526126.1
description Ran GTPase binding protein, putative [Ricinus communis]
swissprot
ID Q17TI5
description Protein BREVIS RADIX OS=Arabidopsis thaliana GN=BRX PE=1 SV=2
trembl
ID B9SJF7
description Ran GTPase binding protein, putative OS=Ricinus communis GN=RCOM_0136880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010024_010 0.0 - - Ran GTPase binding protein, putative [Ricinus communis]
2 Hb_022593_060 0.0118726786 - - -
3 Hb_001206_070 0.0498288172 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_001241_060 0.0729807865 - - -
5 Hb_001385_050 0.1135220364 - - catalytic, putative [Ricinus communis]
6 Hb_004429_040 0.1193944627 - - -
7 Hb_000116_080 0.1408256837 - - PREDICTED: uncharacterized protein LOC104097358 [Nicotiana tomentosiformis]
8 Hb_002490_040 0.1504029096 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
9 Hb_001762_070 0.1759357688 - - -
10 Hb_000563_290 0.1841962182 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
11 Hb_001125_020 0.19078201 - - hypothetical protein B456_001G219500 [Gossypium raimondii]
12 Hb_000962_010 0.2038503307 - - -
13 Hb_000005_210 0.2103899236 - - -
14 Hb_000041_170 0.2103899236 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
15 Hb_000047_040 0.2103899236 - - PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]
16 Hb_000072_260 0.2103899236 - - hypothetical protein MTR_5g044090 [Medicago truncatula]
17 Hb_000081_170 0.2103899236 - - -
18 Hb_000088_250 0.2103899236 - - -
19 Hb_000110_220 0.2103899236 - - -
20 Hb_000110_360 0.2103899236 - - -

Gene co-expression network

sample Hb_010024_010 Hb_010024_010 Hb_022593_060 Hb_022593_060 Hb_010024_010--Hb_022593_060 Hb_001206_070 Hb_001206_070 Hb_010024_010--Hb_001206_070 Hb_001241_060 Hb_001241_060 Hb_010024_010--Hb_001241_060 Hb_001385_050 Hb_001385_050 Hb_010024_010--Hb_001385_050 Hb_004429_040 Hb_004429_040 Hb_010024_010--Hb_004429_040 Hb_000116_080 Hb_000116_080 Hb_010024_010--Hb_000116_080 Hb_022593_060--Hb_001206_070 Hb_022593_060--Hb_001241_060 Hb_022593_060--Hb_001385_050 Hb_022593_060--Hb_000116_080 Hb_022593_060--Hb_004429_040 Hb_001206_070--Hb_000116_080 Hb_001206_070--Hb_001385_050 Hb_001206_070--Hb_001241_060 Hb_001125_020 Hb_001125_020 Hb_001206_070--Hb_001125_020 Hb_001241_060--Hb_004429_040 Hb_002490_040 Hb_002490_040 Hb_001241_060--Hb_002490_040 Hb_000563_290 Hb_000563_290 Hb_001241_060--Hb_000563_290 Hb_001385_050--Hb_001125_020 Hb_001385_050--Hb_000116_080 Hb_001385_050--Hb_001241_060 Hb_004429_040--Hb_002490_040 Hb_004429_040--Hb_000563_290 Hb_000195_050 Hb_000195_050 Hb_004429_040--Hb_000195_050 Hb_000005_210 Hb_000005_210 Hb_000116_080--Hb_000005_210 Hb_000041_170 Hb_000041_170 Hb_000116_080--Hb_000041_170 Hb_000047_040 Hb_000047_040 Hb_000116_080--Hb_000047_040 Hb_000072_260 Hb_000072_260 Hb_000116_080--Hb_000072_260 Hb_000081_170 Hb_000081_170 Hb_000116_080--Hb_000081_170 Hb_000088_250 Hb_000088_250 Hb_000116_080--Hb_000088_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0379889 0 0 0 0 0.405001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis