Hb_027337_070

Information

Type -
Description -
Location Contig27337: 44747-45211
Sequence    

Annotation

kegg
ID pop:POPTR_0001s29030g
description POPTRDRAFT_753157; hypothetical protein
nr
ID XP_002300320.1
description hypothetical protein POPTR_0001s29030g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GJ26
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s29030g PE=4 SV=1
Gene Ontology
ID GO:0008233
description PREDICTED: uncharacterized protein LOC102627366

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027337_070 0.0 - - hypothetical protein POPTR_0001s29030g [Populus trichocarpa]
2 Hb_004361_030 0.1460144845 - - PREDICTED: uncharacterized protein LOC104239397 isoform X1 [Nicotiana sylvestris]
3 Hb_000407_060 0.1944412464 - - -
4 Hb_003185_060 0.1946550904 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Amborella trichopoda]
5 Hb_002003_110 0.2371640946 - - PREDICTED: uncharacterized protein LOC105634406 [Jatropha curcas]
6 Hb_000580_040 0.2418445235 - - -
7 Hb_045527_010 0.2527237162 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
8 Hb_063472_010 0.2572086622 - - hypothetical protein [Pseudomonas tolaasii]
9 Hb_002871_200 0.2624041415 - - -
10 Hb_003581_040 0.262413049 - - hypothetical protein PHAVU_002G080900g [Phaseolus vulgaris]
11 Hb_022348_020 0.2624425008 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_000078_040 0.2634497086 - - PREDICTED: uncharacterized protein LOC104907366 [Beta vulgaris subsp. vulgaris]
13 Hb_078466_020 0.2634630321 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
14 Hb_001623_440 0.2643134395 - - hypothetical protein JCGZ_12908 [Jatropha curcas]
15 Hb_012815_020 0.2649973527 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
16 Hb_007139_010 0.2650967475 - - hypothetical protein POPTR_0016s134801g, partial [Populus trichocarpa]
17 Hb_019859_030 0.2651364921 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
18 Hb_124976_010 0.2662039917 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
19 Hb_004650_090 0.2671474794 - - -
20 Hb_080147_010 0.2680600577 - - -

Gene co-expression network

sample Hb_027337_070 Hb_027337_070 Hb_004361_030 Hb_004361_030 Hb_027337_070--Hb_004361_030 Hb_000407_060 Hb_000407_060 Hb_027337_070--Hb_000407_060 Hb_003185_060 Hb_003185_060 Hb_027337_070--Hb_003185_060 Hb_002003_110 Hb_002003_110 Hb_027337_070--Hb_002003_110 Hb_000580_040 Hb_000580_040 Hb_027337_070--Hb_000580_040 Hb_045527_010 Hb_045527_010 Hb_027337_070--Hb_045527_010 Hb_004361_030--Hb_003185_060 Hb_172632_020 Hb_172632_020 Hb_004361_030--Hb_172632_020 Hb_006216_010 Hb_006216_010 Hb_004361_030--Hb_006216_010 Hb_057217_010 Hb_057217_010 Hb_004361_030--Hb_057217_010 Hb_150998_010 Hb_150998_010 Hb_004361_030--Hb_150998_010 Hb_002367_120 Hb_002367_120 Hb_000407_060--Hb_002367_120 Hb_000407_060--Hb_172632_020 Hb_000407_060--Hb_004361_030 Hb_000248_120 Hb_000248_120 Hb_000407_060--Hb_000248_120 Hb_000407_060--Hb_057217_010 Hb_063472_010 Hb_063472_010 Hb_003185_060--Hb_063472_010 Hb_003185_060--Hb_045527_010 Hb_058148_010 Hb_058148_010 Hb_003185_060--Hb_058148_010 Hb_003185_060--Hb_006216_010 Hb_089341_010 Hb_089341_010 Hb_002003_110--Hb_089341_010 Hb_002003_110--Hb_000407_060 Hb_002003_110--Hb_004361_030 Hb_002003_110--Hb_172632_020 Hb_005269_030 Hb_005269_030 Hb_002003_110--Hb_005269_030 Hb_173423_010 Hb_173423_010 Hb_000580_040--Hb_173423_010 Hb_043950_010 Hb_043950_010 Hb_000580_040--Hb_043950_010 Hb_007545_160 Hb_007545_160 Hb_000580_040--Hb_007545_160 Hb_004410_060 Hb_004410_060 Hb_000580_040--Hb_004410_060 Hb_124976_010 Hb_124976_010 Hb_000580_040--Hb_124976_010 Hb_019859_030 Hb_019859_030 Hb_000580_040--Hb_019859_030 Hb_045527_010--Hb_063472_010 Hb_045527_010--Hb_058148_010 Hb_007194_020 Hb_007194_020 Hb_045527_010--Hb_007194_020 Hb_045527_010--Hb_000580_040 Hb_010810_090 Hb_010810_090 Hb_045527_010--Hb_010810_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.278355 0.0534322 0 0 0.406599
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0498864 0

CAGE analysis