Hb_003185_060

Information

Type -
Description -
Location Contig3185: 24611-28261
Sequence    

Annotation

kegg
ID atr:s00007p00269350
description AMTR_s00007p00269350; hypothetical protein
nr
ID XP_006843919.1
description PREDICTED: 26S protease regulatory subunit 8 homolog A [Amborella trichopoda]
swissprot
ID Q9C5U3
description 26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=1 SV=1
trembl
ID W1PD13
description Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00007p00269350 PE=3 SV=1
Gene Ontology
ID GO:0000502
description 26s protease regulatory subunit 8 homolog a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003185_060 0.0 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Amborella trichopoda]
2 Hb_063472_010 0.1495048726 - - hypothetical protein [Pseudomonas tolaasii]
3 Hb_004361_030 0.154152047 - - PREDICTED: uncharacterized protein LOC104239397 isoform X1 [Nicotiana sylvestris]
4 Hb_045527_010 0.1572145915 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
5 Hb_027337_070 0.1946550904 - - hypothetical protein POPTR_0001s29030g [Populus trichocarpa]
6 Hb_058148_010 0.1967668062 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
7 Hb_006216_010 0.2012298094 - - PREDICTED: uncharacterized protein LOC103411650 [Malus domestica]
8 Hb_000580_040 0.2088432496 - - -
9 Hb_150998_010 0.215653258 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
10 Hb_007194_020 0.2210339353 - - PREDICTED: uncharacterized protein LOC105641615 [Jatropha curcas]
11 Hb_078466_020 0.2247959962 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
12 Hb_080147_010 0.2254147588 - - -
13 Hb_006183_010 0.2255170233 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_012733_080 0.2255920834 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_011362_030 0.2265442305 - - polyprotein [Oryza australiensis]
16 Hb_002871_200 0.227538323 - - -
17 Hb_003581_040 0.2277098312 - - hypothetical protein PHAVU_002G080900g [Phaseolus vulgaris]
18 Hb_022348_020 0.2280618568 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
19 Hb_000078_040 0.2321243821 - - PREDICTED: uncharacterized protein LOC104907366 [Beta vulgaris subsp. vulgaris]
20 Hb_002800_040 0.2347164834 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_003185_060 Hb_003185_060 Hb_063472_010 Hb_063472_010 Hb_003185_060--Hb_063472_010 Hb_004361_030 Hb_004361_030 Hb_003185_060--Hb_004361_030 Hb_045527_010 Hb_045527_010 Hb_003185_060--Hb_045527_010 Hb_027337_070 Hb_027337_070 Hb_003185_060--Hb_027337_070 Hb_058148_010 Hb_058148_010 Hb_003185_060--Hb_058148_010 Hb_006216_010 Hb_006216_010 Hb_003185_060--Hb_006216_010 Hb_063472_010--Hb_045527_010 Hb_063472_010--Hb_058148_010 Hb_007194_020 Hb_007194_020 Hb_063472_010--Hb_007194_020 Hb_063472_010--Hb_006216_010 Hb_010810_090 Hb_010810_090 Hb_063472_010--Hb_010810_090 Hb_004361_030--Hb_027337_070 Hb_172632_020 Hb_172632_020 Hb_004361_030--Hb_172632_020 Hb_004361_030--Hb_006216_010 Hb_057217_010 Hb_057217_010 Hb_004361_030--Hb_057217_010 Hb_150998_010 Hb_150998_010 Hb_004361_030--Hb_150998_010 Hb_045527_010--Hb_058148_010 Hb_045527_010--Hb_007194_020 Hb_000580_040 Hb_000580_040 Hb_045527_010--Hb_000580_040 Hb_045527_010--Hb_010810_090 Hb_000407_060 Hb_000407_060 Hb_027337_070--Hb_000407_060 Hb_002003_110 Hb_002003_110 Hb_027337_070--Hb_002003_110 Hb_027337_070--Hb_000580_040 Hb_027337_070--Hb_045527_010 Hb_058148_010--Hb_007194_020 Hb_000862_020 Hb_000862_020 Hb_058148_010--Hb_000862_020 Hb_058148_010--Hb_006216_010 Hb_058148_010--Hb_010810_090 Hb_006216_010--Hb_150998_010 Hb_006216_010--Hb_000862_020 Hb_046117_040 Hb_046117_040 Hb_006216_010--Hb_046117_040 Hb_006216_010--Hb_007194_020 Hb_126907_010 Hb_126907_010 Hb_006216_010--Hb_126907_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0532932 0 0 0 0.065533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0127971 0

CAGE analysis