Hb_000407_060

Information

Type -
Description -
Location Contig407: 144921-145388
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000407_060 0.0 - - -
2 Hb_002367_120 0.1265151956 - - -
3 Hb_172632_020 0.1852662681 - - -
4 Hb_027337_070 0.1944412464 - - hypothetical protein POPTR_0001s29030g [Populus trichocarpa]
5 Hb_004361_030 0.2260883831 - - PREDICTED: uncharacterized protein LOC104239397 isoform X1 [Nicotiana sylvestris]
6 Hb_000248_120 0.2420053139 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
7 Hb_057217_010 0.2548187069 - - PREDICTED: uncharacterized protein LOC104594412 [Nelumbo nucifera]
8 Hb_002003_110 0.2550215311 - - PREDICTED: uncharacterized protein LOC105634406 [Jatropha curcas]
9 Hb_111834_020 0.2595553722 - - PREDICTED: protein phosphatase methylesterase 1 [Jatropha curcas]
10 Hb_000175_550 0.2615966577 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
11 Hb_147996_010 0.2792756451 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
12 Hb_003238_010 0.2854165754 - - PREDICTED: uncharacterized protein LOC104880636 [Vitis vinifera]
13 Hb_029393_020 0.2928276526 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 12-like [Jatropha curcas]
14 Hb_005214_020 0.2990398794 - - hypothetical protein JCGZ_12886 [Jatropha curcas]
15 Hb_058148_010 0.2999216357 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
16 Hb_063472_010 0.300296237 - - hypothetical protein [Pseudomonas tolaasii]
17 Hb_003185_060 0.3035471588 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Amborella trichopoda]
18 Hb_007194_020 0.3044731864 - - PREDICTED: uncharacterized protein LOC105641615 [Jatropha curcas]
19 Hb_006216_010 0.3045394182 - - PREDICTED: uncharacterized protein LOC103411650 [Malus domestica]
20 Hb_150998_010 0.3102743397 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]

Gene co-expression network

sample Hb_000407_060 Hb_000407_060 Hb_002367_120 Hb_002367_120 Hb_000407_060--Hb_002367_120 Hb_172632_020 Hb_172632_020 Hb_000407_060--Hb_172632_020 Hb_027337_070 Hb_027337_070 Hb_000407_060--Hb_027337_070 Hb_004361_030 Hb_004361_030 Hb_000407_060--Hb_004361_030 Hb_000248_120 Hb_000248_120 Hb_000407_060--Hb_000248_120 Hb_057217_010 Hb_057217_010 Hb_000407_060--Hb_057217_010 Hb_002367_120--Hb_172632_020 Hb_000175_550 Hb_000175_550 Hb_002367_120--Hb_000175_550 Hb_002367_120--Hb_057217_010 Hb_147996_010 Hb_147996_010 Hb_002367_120--Hb_147996_010 Hb_029393_020 Hb_029393_020 Hb_002367_120--Hb_029393_020 Hb_172632_020--Hb_057217_010 Hb_172632_020--Hb_004361_030 Hb_001218_080 Hb_001218_080 Hb_172632_020--Hb_001218_080 Hb_150998_010 Hb_150998_010 Hb_172632_020--Hb_150998_010 Hb_027337_070--Hb_004361_030 Hb_003185_060 Hb_003185_060 Hb_027337_070--Hb_003185_060 Hb_002003_110 Hb_002003_110 Hb_027337_070--Hb_002003_110 Hb_000580_040 Hb_000580_040 Hb_027337_070--Hb_000580_040 Hb_045527_010 Hb_045527_010 Hb_027337_070--Hb_045527_010 Hb_004361_030--Hb_003185_060 Hb_006216_010 Hb_006216_010 Hb_004361_030--Hb_006216_010 Hb_004361_030--Hb_057217_010 Hb_004361_030--Hb_150998_010 Hb_012103_010 Hb_012103_010 Hb_000248_120--Hb_012103_010 Hb_000248_120--Hb_000175_550 Hb_111834_020 Hb_111834_020 Hb_000248_120--Hb_111834_020 Hb_003238_010 Hb_003238_010 Hb_000248_120--Hb_003238_010 Hb_000701_070 Hb_000701_070 Hb_000248_120--Hb_000701_070 Hb_057217_010--Hb_001218_080 Hb_000270_850 Hb_000270_850 Hb_057217_010--Hb_000270_850 Hb_126907_010 Hb_126907_010 Hb_057217_010--Hb_126907_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.165735 0.0742053 0 0 0.171625
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0758941 0

CAGE analysis