Hb_000701_070

Information

Type -
Description -
Location Contig701: 129245-133887
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000701_070 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_003658_030 0.1120679006 - - -
3 Hb_123304_010 0.1586043786 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
4 Hb_176121_010 0.1976673847 - - -
5 Hb_000175_550 0.2051145578 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
6 Hb_000893_030 0.2231805688 - - PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]
7 Hb_005214_020 0.2472009625 - - hypothetical protein JCGZ_12886 [Jatropha curcas]
8 Hb_001032_040 0.2724827258 - - PREDICTED: psbP-like protein 1, chloroplastic [Jatropha curcas]
9 Hb_000248_120 0.2780046306 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
10 Hb_009164_020 0.2813375058 - - hypothetical protein PRUPE_ppa026212mg, partial [Prunus persica]
11 Hb_104498_030 0.3073648876 - - hypothetical protein JCGZ_11092 [Jatropha curcas]
12 Hb_001623_440 0.3123042767 - - hypothetical protein JCGZ_12908 [Jatropha curcas]
13 Hb_007188_060 0.3350165149 - - -
14 Hb_003780_040 0.3426733117 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
15 Hb_000172_500 0.3491444907 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003238_010 0.3593062695 - - PREDICTED: uncharacterized protein LOC104880636 [Vitis vinifera]
17 Hb_000164_090 0.3636076154 - - hypothetical protein [Plasmodium berghei strain ANKA], partial [Plasmodium berghei ANKA]
18 Hb_049884_010 0.3698941684 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_000172_490 0.3742267797 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
20 Hb_002897_020 0.3744041268 - - phosphate transporter [Manihot esculenta]

Gene co-expression network

sample Hb_000701_070 Hb_000701_070 Hb_003658_030 Hb_003658_030 Hb_000701_070--Hb_003658_030 Hb_123304_010 Hb_123304_010 Hb_000701_070--Hb_123304_010 Hb_176121_010 Hb_176121_010 Hb_000701_070--Hb_176121_010 Hb_000175_550 Hb_000175_550 Hb_000701_070--Hb_000175_550 Hb_000893_030 Hb_000893_030 Hb_000701_070--Hb_000893_030 Hb_005214_020 Hb_005214_020 Hb_000701_070--Hb_005214_020 Hb_003658_030--Hb_005214_020 Hb_003658_030--Hb_176121_010 Hb_003658_030--Hb_000175_550 Hb_001623_440 Hb_001623_440 Hb_003658_030--Hb_001623_440 Hb_003658_030--Hb_123304_010 Hb_123304_010--Hb_000893_030 Hb_009164_020 Hb_009164_020 Hb_123304_010--Hb_009164_020 Hb_000172_500 Hb_000172_500 Hb_123304_010--Hb_000172_500 Hb_001032_040 Hb_001032_040 Hb_123304_010--Hb_001032_040 Hb_176121_010--Hb_000175_550 Hb_176121_010--Hb_005214_020 Hb_011942_030 Hb_011942_030 Hb_176121_010--Hb_011942_030 Hb_002897_020 Hb_002897_020 Hb_176121_010--Hb_002897_020 Hb_002367_120 Hb_002367_120 Hb_000175_550--Hb_002367_120 Hb_000175_550--Hb_005214_020 Hb_104498_030 Hb_104498_030 Hb_000175_550--Hb_104498_030 Hb_000893_030--Hb_000172_500 Hb_000893_030--Hb_009164_020 Hb_003767_020 Hb_003767_020 Hb_000893_030--Hb_003767_020 Hb_000116_340 Hb_000116_340 Hb_000893_030--Hb_000116_340 Hb_001501_050 Hb_001501_050 Hb_005214_020--Hb_001501_050 Hb_005214_020--Hb_001623_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00356787 0.00641713 0 0 0.00394214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis