Hb_176121_010

Information

Type -
Description -
Location Contig176121: 441-1308
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_176121_010 0.0 - - -
2 Hb_000175_550 0.1732455603 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
3 Hb_003658_030 0.1787419889 - - -
4 Hb_005214_020 0.1941624727 - - hypothetical protein JCGZ_12886 [Jatropha curcas]
5 Hb_000701_070 0.1976673847 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_011942_030 0.2556274095 - - -
7 Hb_002897_020 0.2656165849 - - phosphate transporter [Manihot esculenta]
8 Hb_000836_180 0.2686828618 - - ferric reductase oxidase [Manihot esculenta]
9 Hb_001501_050 0.285605599 - - Wall associated kinase-like 6, putative [Theobroma cacao]
10 Hb_173479_010 0.2900174585 - - -
11 Hb_003687_260 0.2902908819 - - PREDICTED: inorganic phosphate transporter 1-4-like [Camelina sativa]
12 Hb_002539_060 0.2903325499 - - -
13 Hb_049719_010 0.2905386699 - - ATP binding protein, putative [Ricinus communis]
14 Hb_019429_010 0.2906550968 - - conserved hypothetical protein [Ricinus communis]
15 Hb_072376_010 0.2910136881 - - -
16 Hb_000963_100 0.2910359452 - - Protein SUA5, putative [Ricinus communis]
17 Hb_052135_040 0.2910408804 - - -
18 Hb_081212_010 0.2910411417 - - -
19 Hb_095589_010 0.2910624725 - - Ankyrin repeat family protein, putative [Theobroma cacao]
20 Hb_000473_130 0.2910725974 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]

Gene co-expression network

sample Hb_176121_010 Hb_176121_010 Hb_000175_550 Hb_000175_550 Hb_176121_010--Hb_000175_550 Hb_003658_030 Hb_003658_030 Hb_176121_010--Hb_003658_030 Hb_005214_020 Hb_005214_020 Hb_176121_010--Hb_005214_020 Hb_000701_070 Hb_000701_070 Hb_176121_010--Hb_000701_070 Hb_011942_030 Hb_011942_030 Hb_176121_010--Hb_011942_030 Hb_002897_020 Hb_002897_020 Hb_176121_010--Hb_002897_020 Hb_000175_550--Hb_003658_030 Hb_000175_550--Hb_000701_070 Hb_002367_120 Hb_002367_120 Hb_000175_550--Hb_002367_120 Hb_000175_550--Hb_005214_020 Hb_104498_030 Hb_104498_030 Hb_000175_550--Hb_104498_030 Hb_003658_030--Hb_000701_070 Hb_003658_030--Hb_005214_020 Hb_001623_440 Hb_001623_440 Hb_003658_030--Hb_001623_440 Hb_123304_010 Hb_123304_010 Hb_003658_030--Hb_123304_010 Hb_005214_020--Hb_000701_070 Hb_001501_050 Hb_001501_050 Hb_005214_020--Hb_001501_050 Hb_005214_020--Hb_001623_440 Hb_000701_070--Hb_123304_010 Hb_000893_030 Hb_000893_030 Hb_000701_070--Hb_000893_030 Hb_011942_030--Hb_002897_020 Hb_039385_010 Hb_039385_010 Hb_011942_030--Hb_039385_010 Hb_011903_030 Hb_011903_030 Hb_011942_030--Hb_011903_030 Hb_000742_050 Hb_000742_050 Hb_011942_030--Hb_000742_050 Hb_000629_050 Hb_000629_050 Hb_011942_030--Hb_000629_050 Hb_005417_020 Hb_005417_020 Hb_011942_030--Hb_005417_020 Hb_115513_030 Hb_115513_030 Hb_002897_020--Hb_115513_030 Hb_000836_180 Hb_000836_180 Hb_002897_020--Hb_000836_180 Hb_000433_050 Hb_000433_050 Hb_002897_020--Hb_000433_050 Hb_104641_010 Hb_104641_010 Hb_002897_020--Hb_104641_010 Hb_179363_010 Hb_179363_010 Hb_002897_020--Hb_179363_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.74596 1.38796 0 0 0.589761
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis