Hb_006216_010

Information

Type -
Description -
Location Contig6216: 12733-15791
Sequence    

Annotation

kegg
ID pxb:103931641
description uncharacterized LOC103931641
nr
ID XP_008348500.1
description PREDICTED: uncharacterized protein LOC103411650 [Malus domestica]
swissprot
ID Q2F7J3
description Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP35) GN=gag-pol PE=1 SV=1
trembl
ID A5AWF1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040943 PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC103931640

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006216_010 0.0 - - PREDICTED: uncharacterized protein LOC103411650 [Malus domestica]
2 Hb_150998_010 0.0157592648 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
3 Hb_000862_020 0.1258226387 - - PREDICTED: cytochrome P450 87A3 [Jatropha curcas]
4 Hb_046117_040 0.1286069141 - - hypothetical protein JCGZ_07941 [Jatropha curcas]
5 Hb_007194_020 0.1364167378 - - PREDICTED: uncharacterized protein LOC105641615 [Jatropha curcas]
6 Hb_126907_010 0.1534425367 - - -
7 Hb_058148_010 0.1592638916 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
8 Hb_000281_170 0.162573676 - - polyprotein [Citrus endogenous pararetrovirus]
9 Hb_000117_170 0.1741100743 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
10 Hb_002774_130 0.1878289444 - - -
11 Hb_003185_060 0.2012298094 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Amborella trichopoda]
12 Hb_084611_010 0.2030337524 - - PREDICTED: uncharacterized protein LOC104249812 [Nicotiana sylvestris]
13 Hb_063472_010 0.2052290103 - - hypothetical protein [Pseudomonas tolaasii]
14 Hb_004361_030 0.2059103463 - - PREDICTED: uncharacterized protein LOC104239397 isoform X1 [Nicotiana sylvestris]
15 Hb_172632_020 0.2217931843 - - -
16 Hb_000849_110 0.22267456 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
17 Hb_045527_010 0.2498946185 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
18 Hb_057217_010 0.2511050077 - - PREDICTED: uncharacterized protein LOC104594412 [Nelumbo nucifera]
19 Hb_001687_050 0.2773689565 - - -
20 Hb_010810_090 0.281297071 - - -

Gene co-expression network

sample Hb_006216_010 Hb_006216_010 Hb_150998_010 Hb_150998_010 Hb_006216_010--Hb_150998_010 Hb_000862_020 Hb_000862_020 Hb_006216_010--Hb_000862_020 Hb_046117_040 Hb_046117_040 Hb_006216_010--Hb_046117_040 Hb_007194_020 Hb_007194_020 Hb_006216_010--Hb_007194_020 Hb_126907_010 Hb_126907_010 Hb_006216_010--Hb_126907_010 Hb_058148_010 Hb_058148_010 Hb_006216_010--Hb_058148_010 Hb_150998_010--Hb_046117_040 Hb_150998_010--Hb_000862_020 Hb_150998_010--Hb_126907_010 Hb_150998_010--Hb_007194_020 Hb_000281_170 Hb_000281_170 Hb_150998_010--Hb_000281_170 Hb_000862_020--Hb_007194_020 Hb_000862_020--Hb_058148_010 Hb_000862_020--Hb_046117_040 Hb_010810_090 Hb_010810_090 Hb_000862_020--Hb_010810_090 Hb_046117_040--Hb_000281_170 Hb_002774_130 Hb_002774_130 Hb_046117_040--Hb_002774_130 Hb_000117_170 Hb_000117_170 Hb_046117_040--Hb_000117_170 Hb_046117_040--Hb_126907_010 Hb_000849_110 Hb_000849_110 Hb_046117_040--Hb_000849_110 Hb_007194_020--Hb_058148_010 Hb_063472_010 Hb_063472_010 Hb_007194_020--Hb_063472_010 Hb_007194_020--Hb_010810_090 Hb_084611_010 Hb_084611_010 Hb_126907_010--Hb_084611_010 Hb_126907_010--Hb_000117_170 Hb_126907_010--Hb_000281_170 Hb_126907_010--Hb_000849_110 Hb_058148_010--Hb_063472_010 Hb_045527_010 Hb_045527_010 Hb_058148_010--Hb_045527_010 Hb_058148_010--Hb_010810_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0144781 0 0 0 0.00834115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00623485 0

CAGE analysis