Hb_147996_010

Information

Type -
Description -
Location Contig147996: 621-2183
Sequence    

Annotation

kegg
ID rcu:RCOM_0558500
description rac-GTP binding protein, putative
nr
ID XP_012092252.1
description PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
swissprot
ID F4J0W4
description Mitochondrial Rho GTPase 2 OS=Arabidopsis thaliana GN=MIRO2 PE=2 SV=1
trembl
ID A0A067JC93
description Mitochondrial Rho GTPase OS=Jatropha curcas GN=JCGZ_21937 PE=3 SV=1
Gene Ontology
ID GO:0005741
description mitochondrial rho gtpase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12090: 827-1790
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_147996_010 0.0 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
2 Hb_000610_020 0.2163852176 - - unknown [Glycine max]
3 Hb_029393_020 0.2439871908 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 12-like [Jatropha curcas]
4 Hb_010921_090 0.2456111105 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
5 Hb_001486_140 0.2485974525 - - PREDICTED: probable glycosyltransferase At5g03795 [Vitis vinifera]
6 Hb_002367_120 0.2512429983 - - -
7 Hb_006615_040 0.2561236451 - - monoxygenase, putative [Ricinus communis]
8 Hb_003238_010 0.2742504333 - - PREDICTED: uncharacterized protein LOC104880636 [Vitis vinifera]
9 Hb_000407_060 0.2792756451 - - -
10 Hb_001100_030 0.2869570935 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
11 Hb_001366_130 0.2918192164 - - unnamed protein product [Coffea canephora]
12 Hb_003125_020 0.2959828092 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
13 Hb_011861_110 0.2986148625 - - PREDICTED: uncharacterized protein LOC105636580 [Jatropha curcas]
14 Hb_001373_020 0.3051432458 - - -
15 Hb_004976_060 0.3071064804 - - -
16 Hb_005488_120 0.3099422281 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]
17 Hb_172632_020 0.3115839231 - - -
18 Hb_000191_160 0.3127736039 - - hypothetical protein EUGRSUZ_C03547 [Eucalyptus grandis]
19 Hb_000622_280 0.3150979625 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
20 Hb_005276_170 0.3195177467 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_147996_010 Hb_147996_010 Hb_000610_020 Hb_000610_020 Hb_147996_010--Hb_000610_020 Hb_029393_020 Hb_029393_020 Hb_147996_010--Hb_029393_020 Hb_010921_090 Hb_010921_090 Hb_147996_010--Hb_010921_090 Hb_001486_140 Hb_001486_140 Hb_147996_010--Hb_001486_140 Hb_002367_120 Hb_002367_120 Hb_147996_010--Hb_002367_120 Hb_006615_040 Hb_006615_040 Hb_147996_010--Hb_006615_040 Hb_000610_020--Hb_010921_090 Hb_000787_190 Hb_000787_190 Hb_000610_020--Hb_000787_190 Hb_001584_010 Hb_001584_010 Hb_000610_020--Hb_001584_010 Hb_002553_160 Hb_002553_160 Hb_000610_020--Hb_002553_160 Hb_000130_060 Hb_000130_060 Hb_000610_020--Hb_000130_060 Hb_000589_130 Hb_000589_130 Hb_029393_020--Hb_000589_130 Hb_001251_070 Hb_001251_070 Hb_029393_020--Hb_001251_070 Hb_029393_020--Hb_006615_040 Hb_000566_190 Hb_000566_190 Hb_029393_020--Hb_000566_190 Hb_007253_040 Hb_007253_040 Hb_029393_020--Hb_007253_040 Hb_011861_110 Hb_011861_110 Hb_010921_090--Hb_011861_110 Hb_001486_150 Hb_001486_150 Hb_010921_090--Hb_001486_150 Hb_004007_120 Hb_004007_120 Hb_010921_090--Hb_004007_120 Hb_004162_010 Hb_004162_010 Hb_010921_090--Hb_004162_010 Hb_073096_010 Hb_073096_010 Hb_010921_090--Hb_073096_010 Hb_005839_100 Hb_005839_100 Hb_001486_140--Hb_005839_100 Hb_001100_030 Hb_001100_030 Hb_001486_140--Hb_001100_030 Hb_004102_050 Hb_004102_050 Hb_001486_140--Hb_004102_050 Hb_000836_610 Hb_000836_610 Hb_001486_140--Hb_000836_610 Hb_006054_020 Hb_006054_020 Hb_001486_140--Hb_006054_020 Hb_000407_060 Hb_000407_060 Hb_002367_120--Hb_000407_060 Hb_172632_020 Hb_172632_020 Hb_002367_120--Hb_172632_020 Hb_000175_550 Hb_000175_550 Hb_002367_120--Hb_000175_550 Hb_057217_010 Hb_057217_010 Hb_002367_120--Hb_057217_010 Hb_002367_120--Hb_029393_020 Hb_004230_060 Hb_004230_060 Hb_006615_040--Hb_004230_060 Hb_004976_040 Hb_004976_040 Hb_006615_040--Hb_004976_040 Hb_005147_040 Hb_005147_040 Hb_006615_040--Hb_005147_040 Hb_006615_040--Hb_001584_010 Hb_004466_070 Hb_004466_070 Hb_006615_040--Hb_004466_070 Hb_000107_440 Hb_000107_440 Hb_006615_040--Hb_000107_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0362319 1.22437 0.796714 0.16344 0.0364235 0.773016
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0837351 0.131649 0 0.804358 0

CAGE analysis