Hb_006054_020

Information

Type -
Description -
Location Contig6054: 35949-48995
Sequence    

Annotation

kegg
ID rcu:RCOM_0879800
description hypothetical protein
nr
ID XP_002525013.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SG94
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0879800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006054_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004102_050 0.1310662342 - - JHL25H03.10 [Jatropha curcas]
3 Hb_003025_010 0.1500902365 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X2 [Populus euphratica]
4 Hb_001921_020 0.2374757154 desease resistance Gene Name: LRR_8 PREDICTED: disease resistance protein RPM1-like isoform X2 [Jatropha curcas]
5 Hb_000191_160 0.241827193 - - hypothetical protein EUGRSUZ_C03547 [Eucalyptus grandis]
6 Hb_046417_010 0.2539199252 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
7 Hb_001486_140 0.2593509645 - - PREDICTED: probable glycosyltransferase At5g03795 [Vitis vinifera]
8 Hb_007527_030 0.2619779058 - - -
9 Hb_005653_100 0.2638015329 - - hypothetical protein POPTR_0004s19580g [Populus trichocarpa]
10 Hb_000011_480 0.2676140791 - - zinc finger protein, putative [Ricinus communis]
11 Hb_000541_020 0.2717195009 - - -
12 Hb_000220_170 0.273047295 - - -
13 Hb_111693_010 0.2742417478 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
14 Hb_034585_020 0.2748539585 - - -
15 Hb_001101_020 0.2771656121 - - hypothetical protein RCOM_0615680 [Ricinus communis]
16 Hb_002374_110 0.2779595567 - - PREDICTED: uncharacterized protein LOC105638965 [Jatropha curcas]
17 Hb_002603_030 0.2783087418 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
18 Hb_000556_140 0.2801331028 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 9 [Jatropha curcas]
19 Hb_001789_010 0.2801833076 - - hypothetical protein POPTR_0015s13020g [Populus trichocarpa]
20 Hb_001609_080 0.2802438844 - - hypothetical protein POPTR_0017s05660g [Populus trichocarpa]

Gene co-expression network

sample Hb_006054_020 Hb_006054_020 Hb_004102_050 Hb_004102_050 Hb_006054_020--Hb_004102_050 Hb_003025_010 Hb_003025_010 Hb_006054_020--Hb_003025_010 Hb_001921_020 Hb_001921_020 Hb_006054_020--Hb_001921_020 Hb_000191_160 Hb_000191_160 Hb_006054_020--Hb_000191_160 Hb_046417_010 Hb_046417_010 Hb_006054_020--Hb_046417_010 Hb_001486_140 Hb_001486_140 Hb_006054_020--Hb_001486_140 Hb_004102_050--Hb_003025_010 Hb_007527_030 Hb_007527_030 Hb_004102_050--Hb_007527_030 Hb_004102_050--Hb_001486_140 Hb_004102_050--Hb_000191_160 Hb_011377_010 Hb_011377_010 Hb_004102_050--Hb_011377_010 Hb_003025_010--Hb_001921_020 Hb_048476_010 Hb_048476_010 Hb_003025_010--Hb_048476_010 Hb_080147_060 Hb_080147_060 Hb_003025_010--Hb_080147_060 Hb_003025_010--Hb_000191_160 Hb_002374_110 Hb_002374_110 Hb_001921_020--Hb_002374_110 Hb_002843_010 Hb_002843_010 Hb_001921_020--Hb_002843_010 Hb_127743_030 Hb_127743_030 Hb_001921_020--Hb_127743_030 Hb_001723_070 Hb_001723_070 Hb_001921_020--Hb_001723_070 Hb_001921_020--Hb_048476_010 Hb_007432_050 Hb_007432_050 Hb_001921_020--Hb_007432_050 Hb_006920_040 Hb_006920_040 Hb_000191_160--Hb_006920_040 Hb_000191_160--Hb_007527_030 Hb_002553_100 Hb_002553_100 Hb_000191_160--Hb_002553_100 Hb_002603_030 Hb_002603_030 Hb_046417_010--Hb_002603_030 Hb_002027_310 Hb_002027_310 Hb_046417_010--Hb_002027_310 Hb_042083_060 Hb_042083_060 Hb_046417_010--Hb_042083_060 Hb_010174_140 Hb_010174_140 Hb_046417_010--Hb_010174_140 Hb_111985_160 Hb_111985_160 Hb_046417_010--Hb_111985_160 Hb_111985_120 Hb_111985_120 Hb_046417_010--Hb_111985_120 Hb_005839_100 Hb_005839_100 Hb_001486_140--Hb_005839_100 Hb_001100_030 Hb_001100_030 Hb_001486_140--Hb_001100_030 Hb_147996_010 Hb_147996_010 Hb_001486_140--Hb_147996_010 Hb_000836_610 Hb_000836_610 Hb_001486_140--Hb_000836_610
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0116673 0.0248609 0.0433892 0.00667718 0 0.0164682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.113739 0

CAGE analysis