Hb_002603_030

Information

Type -
Description -
Location Contig2603: 7593-13429
Sequence    

Annotation

kegg
ID rcu:RCOM_0339650
description Nodulation receptor kinase precursor, putative (EC:2.7.11.30)
nr
ID XP_002533651.1
description Nodulation receptor kinase precursor, putative [Ricinus communis]
swissprot
ID Q9LY50
description Putative serine/threonine-protein kinase-like protein CCR3 OS=Arabidopsis thaliana GN=CCR3 PE=2 SV=1
trembl
ID B9T5Y2
description Nodulation receptor kinase, putative OS=Ricinus communis GN=RCOM_0339650 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase-like protein ccr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002603_030 0.0 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
2 Hb_000085_290 0.164794803 - - PREDICTED: putative MO25-like protein At5g47540 [Jatropha curcas]
3 Hb_001579_290 0.1831641586 - - PREDICTED: polygalacturonase At1g48100 isoform X1 [Jatropha curcas]
4 Hb_000705_090 0.1865946293 - - PREDICTED: uncharacterized protein LOC100246830 [Vitis vinifera]
5 Hb_006573_260 0.1916135923 - - -
6 Hb_002849_090 0.2037616142 - - hypothetical protein POPTR_0002s16380g [Populus trichocarpa]
7 Hb_111985_120 0.2045954265 - - dihydroflavonol-4-reductase [Vitis rotundifolia]
8 Hb_002081_220 0.2054959917 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
9 Hb_021888_010 0.2056259072 - - PREDICTED: aspartic proteinase-like protein 1 isoform X1 [Jatropha curcas]
10 Hb_042083_060 0.2066914481 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
11 Hb_046417_010 0.2089793979 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
12 Hb_000723_050 0.2098086993 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
13 Hb_002003_030 0.2101150737 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
14 Hb_001691_030 0.2102867025 - - lipoxygenase, putative [Ricinus communis]
15 Hb_008554_090 0.2134161913 - - zinc finger protein, putative [Ricinus communis]
16 Hb_001532_060 0.2149470326 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
17 Hb_000101_370 0.2167393406 - - PREDICTED: dihydrofolate reductase-like isoform X1 [Jatropha curcas]
18 Hb_004525_110 0.2173995117 - - hypothetical protein POPTR_0007s12850g [Populus trichocarpa]
19 Hb_164300_010 0.2185599234 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
20 Hb_111985_160 0.2190834861 - - hypothetical protein B456_010G008900 [Gossypium raimondii]

Gene co-expression network

sample Hb_002603_030 Hb_002603_030 Hb_000085_290 Hb_000085_290 Hb_002603_030--Hb_000085_290 Hb_001579_290 Hb_001579_290 Hb_002603_030--Hb_001579_290 Hb_000705_090 Hb_000705_090 Hb_002603_030--Hb_000705_090 Hb_006573_260 Hb_006573_260 Hb_002603_030--Hb_006573_260 Hb_002849_090 Hb_002849_090 Hb_002603_030--Hb_002849_090 Hb_111985_120 Hb_111985_120 Hb_002603_030--Hb_111985_120 Hb_000556_180 Hb_000556_180 Hb_000085_290--Hb_000556_180 Hb_000085_290--Hb_002849_090 Hb_000473_070 Hb_000473_070 Hb_000085_290--Hb_000473_070 Hb_009296_060 Hb_009296_060 Hb_000085_290--Hb_009296_060 Hb_002304_190 Hb_002304_190 Hb_000085_290--Hb_002304_190 Hb_001691_030 Hb_001691_030 Hb_001579_290--Hb_001691_030 Hb_001579_290--Hb_002849_090 Hb_001691_220 Hb_001691_220 Hb_001579_290--Hb_001691_220 Hb_001579_290--Hb_000085_290 Hb_001268_330 Hb_001268_330 Hb_001579_290--Hb_001268_330 Hb_106321_010 Hb_106321_010 Hb_000705_090--Hb_106321_010 Hb_000215_420 Hb_000215_420 Hb_000705_090--Hb_000215_420 Hb_000705_100 Hb_000705_100 Hb_000705_090--Hb_000705_100 Hb_164300_010 Hb_164300_010 Hb_000705_090--Hb_164300_010 Hb_005168_030 Hb_005168_030 Hb_000705_090--Hb_005168_030 Hb_002003_030 Hb_002003_030 Hb_000705_090--Hb_002003_030 Hb_028927_010 Hb_028927_010 Hb_006573_260--Hb_028927_010 Hb_000057_180 Hb_000057_180 Hb_006573_260--Hb_000057_180 Hb_021888_010 Hb_021888_010 Hb_006573_260--Hb_021888_010 Hb_006573_260--Hb_002003_030 Hb_116469_010 Hb_116469_010 Hb_006573_260--Hb_116469_010 Hb_006573_260--Hb_106321_010 Hb_002849_090--Hb_001691_030 Hb_001414_020 Hb_001414_020 Hb_002849_090--Hb_001414_020 Hb_177321_040 Hb_177321_040 Hb_002849_090--Hb_177321_040 Hb_001789_010 Hb_001789_010 Hb_111985_120--Hb_001789_010 Hb_001377_480 Hb_001377_480 Hb_111985_120--Hb_001377_480 Hb_111693_010 Hb_111693_010 Hb_111985_120--Hb_111693_010 Hb_000220_170 Hb_000220_170 Hb_111985_120--Hb_000220_170 Hb_111985_160 Hb_111985_160 Hb_111985_120--Hb_111985_160 Hb_001101_020 Hb_001101_020 Hb_111985_120--Hb_001101_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0367903 0.110748 0.640901 0.15183 0.0106274 0.0321082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0203143 0.0383879 0.890112 0.0427679

CAGE analysis