Hb_000085_290

Information

Type -
Description -
Location Contig85: 282579-286888
Sequence    

Annotation

kegg
ID rcu:RCOM_0046290
description Calcium-binding protein, putative
nr
ID XP_012070942.1
description PREDICTED: putative MO25-like protein At5g47540 [Jatropha curcas]
swissprot
ID Q9FGK3
description Putative MO25-like protein At5g47540 OS=Arabidopsis thaliana GN=At5g47540 PE=2 SV=1
trembl
ID A0A067KW95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00975 PE=4 SV=1
Gene Ontology
ID GO:0005488
description mo25-like protein at5g47540

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60369: 283205-286248
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_290 0.0 - - PREDICTED: putative MO25-like protein At5g47540 [Jatropha curcas]
2 Hb_000556_180 0.1553344037 - - hypothetical protein POPTR_0014s06690g [Populus trichocarpa]
3 Hb_002849_090 0.1645825993 - - hypothetical protein POPTR_0002s16380g [Populus trichocarpa]
4 Hb_002603_030 0.164794803 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
5 Hb_000473_070 0.1660078787 - - PREDICTED: amino-acid permease BAT1 homolog [Jatropha curcas]
6 Hb_009296_060 0.1663500141 - - glutathione s-transferase, putative [Ricinus communis]
7 Hb_002304_190 0.1691514244 - - PREDICTED: 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase [Jatropha curcas]
8 Hb_000723_050 0.1710765819 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
9 Hb_002685_100 0.1748959158 - - low temperature inducible SLTI66 [Glycine max]
10 Hb_001439_040 0.175269673 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
11 Hb_002025_350 0.1766765377 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
12 Hb_033312_050 0.17767593 - - PREDICTED: uncharacterized protein LOC105638598, partial [Jatropha curcas]
13 Hb_021409_140 0.1792138395 - - PREDICTED: trehalase isoform X1 [Jatropha curcas]
14 Hb_025526_080 0.1825362676 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Vitis vinifera]
15 Hb_000057_180 0.1834060863 - - hypothetical protein POPTR_0001s18200g [Populus trichocarpa]
16 Hb_001474_010 0.1838646866 - - PREDICTED: synaptotagmin-3 isoform X1 [Jatropha curcas]
17 Hb_001024_030 0.1879240336 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X1 [Jatropha curcas]
18 Hb_006573_260 0.1883267862 - - -
19 Hb_000566_110 0.1887686482 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Prunus mume]
20 Hb_000720_090 0.1888135814 transcription factor TF Family: MYB myb, putative [Ricinus communis]

Gene co-expression network

sample Hb_000085_290 Hb_000085_290 Hb_000556_180 Hb_000556_180 Hb_000085_290--Hb_000556_180 Hb_002849_090 Hb_002849_090 Hb_000085_290--Hb_002849_090 Hb_002603_030 Hb_002603_030 Hb_000085_290--Hb_002603_030 Hb_000473_070 Hb_000473_070 Hb_000085_290--Hb_000473_070 Hb_009296_060 Hb_009296_060 Hb_000085_290--Hb_009296_060 Hb_002304_190 Hb_002304_190 Hb_000085_290--Hb_002304_190 Hb_000057_180 Hb_000057_180 Hb_000556_180--Hb_000057_180 Hb_005730_070 Hb_005730_070 Hb_000556_180--Hb_005730_070 Hb_011861_020 Hb_011861_020 Hb_000556_180--Hb_011861_020 Hb_150730_010 Hb_150730_010 Hb_000556_180--Hb_150730_010 Hb_000834_210 Hb_000834_210 Hb_000556_180--Hb_000834_210 Hb_116469_010 Hb_116469_010 Hb_000556_180--Hb_116469_010 Hb_001579_290 Hb_001579_290 Hb_002849_090--Hb_001579_290 Hb_001691_030 Hb_001691_030 Hb_002849_090--Hb_001691_030 Hb_001414_020 Hb_001414_020 Hb_002849_090--Hb_001414_020 Hb_177321_040 Hb_177321_040 Hb_002849_090--Hb_177321_040 Hb_002849_090--Hb_002603_030 Hb_002603_030--Hb_001579_290 Hb_000705_090 Hb_000705_090 Hb_002603_030--Hb_000705_090 Hb_006573_260 Hb_006573_260 Hb_002603_030--Hb_006573_260 Hb_111985_120 Hb_111985_120 Hb_002603_030--Hb_111985_120 Hb_002200_060 Hb_002200_060 Hb_000473_070--Hb_002200_060 Hb_002272_230 Hb_002272_230 Hb_000473_070--Hb_002272_230 Hb_003842_010 Hb_003842_010 Hb_000473_070--Hb_003842_010 Hb_000473_070--Hb_009296_060 Hb_000699_050 Hb_000699_050 Hb_000473_070--Hb_000699_050 Hb_001345_010 Hb_001345_010 Hb_000473_070--Hb_001345_010 Hb_000343_040 Hb_000343_040 Hb_009296_060--Hb_000343_040 Hb_000753_180 Hb_000753_180 Hb_009296_060--Hb_000753_180 Hb_001439_040 Hb_001439_040 Hb_009296_060--Hb_001439_040 Hb_009296_060--Hb_000699_050 Hb_005333_210 Hb_005333_210 Hb_009296_060--Hb_005333_210 Hb_011440_010 Hb_011440_010 Hb_009296_060--Hb_011440_010 Hb_002685_100 Hb_002685_100 Hb_002304_190--Hb_002685_100 Hb_001832_110 Hb_001832_110 Hb_002304_190--Hb_001832_110 Hb_033312_050 Hb_033312_050 Hb_002304_190--Hb_033312_050 Hb_000336_280 Hb_000336_280 Hb_002304_190--Hb_000336_280 Hb_000017_320 Hb_000017_320 Hb_002304_190--Hb_000017_320 Hb_009486_120 Hb_009486_120 Hb_002304_190--Hb_009486_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.260002 1.78009 7.59196 3.6847 0.121402 0.390748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.216063 1.04815 0.264766 14.2396 2.06277

CAGE analysis