Hb_001579_290

Information

Type -
Description -
Location Contig1579: 204102-208880
Sequence    

Annotation

kegg
ID rcu:RCOM_0527980
description polygalacturonase, putative (EC:3.2.1.67)
nr
ID XP_012085405.1
description PREDICTED: polygalacturonase At1g48100 isoform X1 [Jatropha curcas]
swissprot
ID I1BYM7
description Exopolygalacturonase rpg15 OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=rpg15 PE=1 SV=1
trembl
ID A0A067K2X7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17763 PE=3 SV=1
Gene Ontology
ID GO:0005576
description polygalacturonase at1g48100 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13843: 204365-208451 , PASA_asmbl_13844: 206891-207134
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001579_290 0.0 - - PREDICTED: polygalacturonase At1g48100 isoform X1 [Jatropha curcas]
2 Hb_001691_030 0.1616450955 - - lipoxygenase, putative [Ricinus communis]
3 Hb_002849_090 0.1716669958 - - hypothetical protein POPTR_0002s16380g [Populus trichocarpa]
4 Hb_002603_030 0.1831641586 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
5 Hb_001691_220 0.1994670405 - - PREDICTED: uncharacterized protein LOC105649537 [Jatropha curcas]
6 Hb_000085_290 0.2254302667 - - PREDICTED: putative MO25-like protein At5g47540 [Jatropha curcas]
7 Hb_001268_330 0.2296174914 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
8 Hb_027242_010 0.2398551443 - - PREDICTED: pathogenesis-related protein 1-like [Populus euphratica]
9 Hb_142522_030 0.2421754042 - - hypothetical protein JCGZ_21596 [Jatropha curcas]
10 Hb_000815_280 0.2426297408 - - PREDICTED: phosphate transporter PHO1 homolog 3 [Jatropha curcas]
11 Hb_004976_050 0.2441226475 - - -
12 Hb_011930_170 0.2460304684 - - glutathione s-transferase, putative [Ricinus communis]
13 Hb_000101_370 0.2470737705 - - PREDICTED: dihydrofolate reductase-like isoform X1 [Jatropha curcas]
14 Hb_006141_030 0.2542080714 - - -
15 Hb_001377_480 0.256432991 transcription factor TF Family: MYB Myb domain protein 7, putative [Theobroma cacao]
16 Hb_001102_060 0.259594519 - - PREDICTED: receptor-like serine/threonine-protein kinase At1g78530 isoform X1 [Jatropha curcas]
17 Hb_046417_010 0.2596071751 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
18 Hb_187211_010 0.2600777033 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
19 Hb_011214_120 0.2611476966 - - PREDICTED: uncharacterized protein LOC105636139 [Jatropha curcas]
20 Hb_000012_040 0.2612945946 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]

Gene co-expression network

sample Hb_001579_290 Hb_001579_290 Hb_001691_030 Hb_001691_030 Hb_001579_290--Hb_001691_030 Hb_002849_090 Hb_002849_090 Hb_001579_290--Hb_002849_090 Hb_002603_030 Hb_002603_030 Hb_001579_290--Hb_002603_030 Hb_001691_220 Hb_001691_220 Hb_001579_290--Hb_001691_220 Hb_000085_290 Hb_000085_290 Hb_001579_290--Hb_000085_290 Hb_001268_330 Hb_001268_330 Hb_001579_290--Hb_001268_330 Hb_001691_030--Hb_002849_090 Hb_001691_030--Hb_001268_330 Hb_001691_030--Hb_002603_030 Hb_004976_050 Hb_004976_050 Hb_001691_030--Hb_004976_050 Hb_000815_280 Hb_000815_280 Hb_001691_030--Hb_000815_280 Hb_002849_090--Hb_000085_290 Hb_001414_020 Hb_001414_020 Hb_002849_090--Hb_001414_020 Hb_177321_040 Hb_177321_040 Hb_002849_090--Hb_177321_040 Hb_002849_090--Hb_002603_030 Hb_002603_030--Hb_000085_290 Hb_000705_090 Hb_000705_090 Hb_002603_030--Hb_000705_090 Hb_006573_260 Hb_006573_260 Hb_002603_030--Hb_006573_260 Hb_111985_120 Hb_111985_120 Hb_002603_030--Hb_111985_120 Hb_027242_010 Hb_027242_010 Hb_001691_220--Hb_027242_010 Hb_002081_220 Hb_002081_220 Hb_001691_220--Hb_002081_220 Hb_000086_720 Hb_000086_720 Hb_001691_220--Hb_000086_720 Hb_187211_010 Hb_187211_010 Hb_001691_220--Hb_187211_010 Hb_001377_480 Hb_001377_480 Hb_001691_220--Hb_001377_480 Hb_000556_180 Hb_000556_180 Hb_000085_290--Hb_000556_180 Hb_000473_070 Hb_000473_070 Hb_000085_290--Hb_000473_070 Hb_009296_060 Hb_009296_060 Hb_000085_290--Hb_009296_060 Hb_002304_190 Hb_002304_190 Hb_000085_290--Hb_002304_190 Hb_131864_020 Hb_131864_020 Hb_001268_330--Hb_131864_020 Hb_000204_030 Hb_000204_030 Hb_001268_330--Hb_000204_030 Hb_029510_110 Hb_029510_110 Hb_001268_330--Hb_029510_110 Hb_001104_200 Hb_001104_200 Hb_001268_330--Hb_001104_200 Hb_007044_070 Hb_007044_070 Hb_001268_330--Hb_007044_070 Hb_000753_250 Hb_000753_250 Hb_001268_330--Hb_000753_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.615172 0.235512 5.88488 1.86661 0.347447 0.322846
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.543657 0.263246 0.65637 11.9514 0.243873

CAGE analysis