Hb_001691_030

Information

Type -
Description -
Location Contig1691: 60278-63328
Sequence    

Annotation

kegg
ID rcu:RCOM_0937100
description lipoxygenase, putative (EC:1.13.11.12)
nr
ID XP_002519072.1
description lipoxygenase, putative [Ricinus communis]
swissprot
ID O24371
description Linoleate 13S-lipoxygenase 3-1, chloroplastic OS=Solanum tuberosum GN=LOX3.1 PE=1 SV=1
trembl
ID B9RZA3
description Lipoxygenase OS=Ricinus communis GN=RCOM_0937100 PE=3 SV=1
Gene Ontology
ID GO:0016702
description linoleate 13s-lipoxygenase 3- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001691_030 0.0 - - lipoxygenase, putative [Ricinus communis]
2 Hb_001579_290 0.1616450955 - - PREDICTED: polygalacturonase At1g48100 isoform X1 [Jatropha curcas]
3 Hb_002849_090 0.1844207736 - - hypothetical protein POPTR_0002s16380g [Populus trichocarpa]
4 Hb_001268_330 0.2070202205 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
5 Hb_002603_030 0.2102867025 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
6 Hb_004976_050 0.21875361 - - -
7 Hb_000815_280 0.2328098542 - - PREDICTED: phosphate transporter PHO1 homolog 3 [Jatropha curcas]
8 Hb_008097_020 0.2331931916 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
9 Hb_012753_190 0.2354638953 - - PREDICTED: protein HAPLESS 2 [Populus euphratica]
10 Hb_002498_040 0.2358844897 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
11 Hb_000012_040 0.2391187764 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
12 Hb_006141_030 0.2455560005 - - -
13 Hb_000085_290 0.2473579508 - - PREDICTED: putative MO25-like protein At5g47540 [Jatropha curcas]
14 Hb_046417_010 0.2488211668 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
15 Hb_004800_220 0.2510632161 - - PREDICTED: random slug protein 5 [Jatropha curcas]
16 Hb_001691_220 0.2521106839 - - PREDICTED: uncharacterized protein LOC105649537 [Jatropha curcas]
17 Hb_007101_210 0.2537039525 - - UDP-glucosyltransferase, putative [Ricinus communis]
18 Hb_131864_020 0.2543004122 - - PREDICTED: anthocyanidin reductase [Jatropha curcas]
19 Hb_142522_030 0.255093568 - - hypothetical protein JCGZ_21596 [Jatropha curcas]
20 Hb_002057_010 0.257948548 - - cinnamoyl-CoA reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001691_030 Hb_001691_030 Hb_001579_290 Hb_001579_290 Hb_001691_030--Hb_001579_290 Hb_002849_090 Hb_002849_090 Hb_001691_030--Hb_002849_090 Hb_001268_330 Hb_001268_330 Hb_001691_030--Hb_001268_330 Hb_002603_030 Hb_002603_030 Hb_001691_030--Hb_002603_030 Hb_004976_050 Hb_004976_050 Hb_001691_030--Hb_004976_050 Hb_000815_280 Hb_000815_280 Hb_001691_030--Hb_000815_280 Hb_001579_290--Hb_002849_090 Hb_001579_290--Hb_002603_030 Hb_001691_220 Hb_001691_220 Hb_001579_290--Hb_001691_220 Hb_000085_290 Hb_000085_290 Hb_001579_290--Hb_000085_290 Hb_001579_290--Hb_001268_330 Hb_002849_090--Hb_000085_290 Hb_001414_020 Hb_001414_020 Hb_002849_090--Hb_001414_020 Hb_177321_040 Hb_177321_040 Hb_002849_090--Hb_177321_040 Hb_002849_090--Hb_002603_030 Hb_131864_020 Hb_131864_020 Hb_001268_330--Hb_131864_020 Hb_000204_030 Hb_000204_030 Hb_001268_330--Hb_000204_030 Hb_029510_110 Hb_029510_110 Hb_001268_330--Hb_029510_110 Hb_001104_200 Hb_001104_200 Hb_001268_330--Hb_001104_200 Hb_007044_070 Hb_007044_070 Hb_001268_330--Hb_007044_070 Hb_000753_250 Hb_000753_250 Hb_001268_330--Hb_000753_250 Hb_002603_030--Hb_000085_290 Hb_000705_090 Hb_000705_090 Hb_002603_030--Hb_000705_090 Hb_006573_260 Hb_006573_260 Hb_002603_030--Hb_006573_260 Hb_111985_120 Hb_111985_120 Hb_002603_030--Hb_111985_120 Hb_000011_290 Hb_000011_290 Hb_004976_050--Hb_000011_290 Hb_138710_010 Hb_138710_010 Hb_004976_050--Hb_138710_010 Hb_094437_060 Hb_094437_060 Hb_004976_050--Hb_094437_060 Hb_004976_050--Hb_002849_090 Hb_000879_190 Hb_000879_190 Hb_004976_050--Hb_000879_190 Hb_158092_060 Hb_158092_060 Hb_004976_050--Hb_158092_060 Hb_000815_280--Hb_131864_020 Hb_000625_130 Hb_000625_130 Hb_000815_280--Hb_000625_130 Hb_025469_040 Hb_025469_040 Hb_000815_280--Hb_025469_040 Hb_000029_420 Hb_000029_420 Hb_000815_280--Hb_000029_420 Hb_000194_080 Hb_000194_080 Hb_000815_280--Hb_000194_080 Hb_111985_160 Hb_111985_160 Hb_000815_280--Hb_111985_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.125548 0.19068 0.935323 0.237332 0.0541364 0.0089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0846399 0.0332993 0.34783 2.51576 0.105735

CAGE analysis