Hb_001414_020

Information

Type -
Description -
Location Contig1414: 13872-26386
Sequence    

Annotation

kegg
ID vvi:100852609
description SEC14 cytosolic factor
nr
ID XP_012072318.1
description PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
swissprot
ID P33324
description CRAL-TRIO domain-containing protein YKL091C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL091C PE=1 SV=2
trembl
ID A0A067L0V9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04768 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11153: 14229-14803 , PASA_asmbl_11154: 15006-15245 , PASA_asmbl_11155: 15550-15680 , PASA_asmbl_11156: 16022-16344 , PASA_asmbl_11158: 17554-18823
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001414_020 0.0 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
2 Hb_007423_020 0.1677411062 - - 2-nitropropane dioxygenase precursor, putative [Ricinus communis]
3 Hb_002539_010 0.1677437601 - - hypothetical protein JCGZ_15711 [Jatropha curcas]
4 Hb_000720_090 0.1695897536 transcription factor TF Family: MYB myb, putative [Ricinus communis]
5 Hb_008749_020 0.1734625099 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000625_030 0.1742870797 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
7 Hb_021409_140 0.1743095209 - - PREDICTED: trehalase isoform X1 [Jatropha curcas]
8 Hb_000907_150 0.1826172411 - - hypothetical protein L484_004295 [Morus notabilis]
9 Hb_006141_030 0.1845451735 - - -
10 Hb_002849_090 0.1894601421 - - hypothetical protein POPTR_0002s16380g [Populus trichocarpa]
11 Hb_002539_020 0.1915045381 - - hypothetical protein CISIN_1g007216mg [Citrus sinensis]
12 Hb_001500_070 0.1927065204 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000707_010 0.1939916734 - - hypothetical protein JCGZ_25098 [Jatropha curcas]
14 Hb_000172_280 0.1942468947 - - aspartate aminotransferase, putative [Ricinus communis]
15 Hb_011633_040 0.1949873812 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
16 Hb_177321_040 0.1985457279 - - hypothetical protein JCGZ_06328 [Jatropha curcas]
17 Hb_004041_100 0.2006656741 - - -
18 Hb_027380_190 0.2018840943 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
19 Hb_002235_050 0.2019699027 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
20 Hb_000116_590 0.2036417785 - - PREDICTED: splicing factor, suppressor of white-apricot homolog [Malus domestica]

Gene co-expression network

sample Hb_001414_020 Hb_001414_020 Hb_007423_020 Hb_007423_020 Hb_001414_020--Hb_007423_020 Hb_002539_010 Hb_002539_010 Hb_001414_020--Hb_002539_010 Hb_000720_090 Hb_000720_090 Hb_001414_020--Hb_000720_090 Hb_008749_020 Hb_008749_020 Hb_001414_020--Hb_008749_020 Hb_000625_030 Hb_000625_030 Hb_001414_020--Hb_000625_030 Hb_021409_140 Hb_021409_140 Hb_001414_020--Hb_021409_140 Hb_002539_020 Hb_002539_020 Hb_007423_020--Hb_002539_020 Hb_000808_170 Hb_000808_170 Hb_007423_020--Hb_000808_170 Hb_006846_120 Hb_006846_120 Hb_007423_020--Hb_006846_120 Hb_007423_020--Hb_000625_030 Hb_000181_020 Hb_000181_020 Hb_007423_020--Hb_000181_020 Hb_007423_020--Hb_002539_010 Hb_011633_040 Hb_011633_040 Hb_002539_010--Hb_011633_040 Hb_002539_010--Hb_002539_020 Hb_000337_010 Hb_000337_010 Hb_002539_010--Hb_000337_010 Hb_002539_010--Hb_000625_030 Hb_001500_070 Hb_001500_070 Hb_002539_010--Hb_001500_070 Hb_008226_070 Hb_008226_070 Hb_002539_010--Hb_008226_070 Hb_000707_010 Hb_000707_010 Hb_000720_090--Hb_000707_010 Hb_000720_090--Hb_000625_030 Hb_000720_090--Hb_008749_020 Hb_000042_380 Hb_000042_380 Hb_000720_090--Hb_000042_380 Hb_002527_060 Hb_002527_060 Hb_000720_090--Hb_002527_060 Hb_008695_150 Hb_008695_150 Hb_000720_090--Hb_008695_150 Hb_008749_020--Hb_000625_030 Hb_004041_100 Hb_004041_100 Hb_008749_020--Hb_004041_100 Hb_000907_150 Hb_000907_150 Hb_008749_020--Hb_000907_150 Hb_000406_090 Hb_000406_090 Hb_008749_020--Hb_000406_090 Hb_008749_020--Hb_001500_070 Hb_000625_030--Hb_004041_100 Hb_000625_030--Hb_000181_020 Hb_000625_030--Hb_001500_070 Hb_001040_150 Hb_001040_150 Hb_000625_030--Hb_001040_150 Hb_000186_290 Hb_000186_290 Hb_021409_140--Hb_000186_290 Hb_000116_120 Hb_000116_120 Hb_021409_140--Hb_000116_120 Hb_021409_140--Hb_000707_010 Hb_021409_140--Hb_000720_090 Hb_003086_010 Hb_003086_010 Hb_021409_140--Hb_003086_010 Hb_172426_050 Hb_172426_050 Hb_021409_140--Hb_172426_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.485978 0.959207 5.86219 4.35221 0.487231 0.494024
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.02959 3.3301 0.368428 12.9107 3.28407

CAGE analysis