Hb_002027_310

Information

Type -
Description -
Location Contig2027: 187111-187530
Sequence    

Annotation

kegg
ID rcu:RCOM_0556880
description hypothetical protein
nr
ID XP_002520702.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S3Y3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0556880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20718: 186817-187594
cDNA
(Sanger)
(ID:Location)		 031_G23.ab1: 186817-187592

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_310 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002376_030 0.1554725955 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_000220_170 0.1597898069 - - -
4 Hb_013652_010 0.1620492001 - - UDP-glucosyltransferase, putative [Ricinus communis]
5 Hb_002374_110 0.1694875284 - - PREDICTED: uncharacterized protein LOC105638965 [Jatropha curcas]
6 Hb_001723_070 0.1735906371 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
7 Hb_003050_050 0.1772150432 - - hypothetical protein JCGZ_04619 [Jatropha curcas]
8 Hb_111693_010 0.1780782071 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
9 Hb_006919_010 0.1793297228 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Vitis vinifera]
10 Hb_059379_020 0.1797967499 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
11 Hb_111985_160 0.1799209705 - - hypothetical protein B456_010G008900 [Gossypium raimondii]
12 Hb_001609_080 0.1848332121 - - hypothetical protein POPTR_0017s05660g [Populus trichocarpa]
13 Hb_058526_010 0.1868376631 - - -
14 Hb_002553_100 0.1890838094 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]
15 Hb_162286_030 0.1900480714 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
16 Hb_001006_200 0.1908651839 transcription factor TF Family: G2-like conserved hypothetical protein [Ricinus communis]
17 Hb_001921_020 0.1930908914 desease resistance Gene Name: LRR_8 PREDICTED: disease resistance protein RPM1-like isoform X2 [Jatropha curcas]
18 Hb_003166_040 0.1934500027 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
19 Hb_000462_020 0.1937993793 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_127743_030 0.1943796023 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_002027_310 Hb_002027_310 Hb_002376_030 Hb_002376_030 Hb_002027_310--Hb_002376_030 Hb_000220_170 Hb_000220_170 Hb_002027_310--Hb_000220_170 Hb_013652_010 Hb_013652_010 Hb_002027_310--Hb_013652_010 Hb_002374_110 Hb_002374_110 Hb_002027_310--Hb_002374_110 Hb_001723_070 Hb_001723_070 Hb_002027_310--Hb_001723_070 Hb_003050_050 Hb_003050_050 Hb_002027_310--Hb_003050_050 Hb_006919_010 Hb_006919_010 Hb_002376_030--Hb_006919_010 Hb_002376_030--Hb_002374_110 Hb_002376_030--Hb_013652_010 Hb_007483_030 Hb_007483_030 Hb_002376_030--Hb_007483_030 Hb_000407_110 Hb_000407_110 Hb_002376_030--Hb_000407_110 Hb_003581_240 Hb_003581_240 Hb_002376_030--Hb_003581_240 Hb_111693_010 Hb_111693_010 Hb_000220_170--Hb_111693_010 Hb_004055_080 Hb_004055_080 Hb_000220_170--Hb_004055_080 Hb_002553_100 Hb_002553_100 Hb_000220_170--Hb_002553_100 Hb_001789_010 Hb_001789_010 Hb_000220_170--Hb_001789_010 Hb_111985_120 Hb_111985_120 Hb_000220_170--Hb_111985_120 Hb_058526_010 Hb_058526_010 Hb_000220_170--Hb_058526_010 Hb_013652_010--Hb_002374_110 Hb_013652_010--Hb_006919_010 Hb_013652_010--Hb_000407_110 Hb_127743_030 Hb_127743_030 Hb_013652_010--Hb_127743_030 Hb_003166_040 Hb_003166_040 Hb_013652_010--Hb_003166_040 Hb_002374_110--Hb_127743_030 Hb_002374_110--Hb_003166_040 Hb_002374_110--Hb_006919_010 Hb_002374_110--Hb_058526_010 Hb_002374_110--Hb_007483_030 Hb_027288_010 Hb_027288_010 Hb_002374_110--Hb_027288_010 Hb_162286_030 Hb_162286_030 Hb_001723_070--Hb_162286_030 Hb_009778_050 Hb_009778_050 Hb_001723_070--Hb_009778_050 Hb_010174_170 Hb_010174_170 Hb_001723_070--Hb_010174_170 Hb_004079_110 Hb_004079_110 Hb_001723_070--Hb_004079_110 Hb_002110_060 Hb_002110_060 Hb_001723_070--Hb_002110_060 Hb_001621_020 Hb_001621_020 Hb_001723_070--Hb_001621_020 Hb_003050_050--Hb_001723_070 Hb_003050_050--Hb_162286_030 Hb_000692_180 Hb_000692_180 Hb_003050_050--Hb_000692_180 Hb_000625_060 Hb_000625_060 Hb_003050_050--Hb_000625_060 Hb_001221_480 Hb_001221_480 Hb_003050_050--Hb_001221_480 Hb_004452_080 Hb_004452_080 Hb_003050_050--Hb_004452_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.49092 5.22205 1.75098 0.21744 0.0697832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.428328 0.463709 14.9193 0

CAGE analysis