Hb_003050_050

Information

Type -
Description -
Location Contig3050: 42113-43688
Sequence    

Annotation

kegg
ID rcu:RCOM_0632660
description gibberellin 2-oxidase, putative (EC:1.14.11.15)
nr
ID KDP37976.1
description hypothetical protein JCGZ_04619 [Jatropha curcas]
swissprot
ID Q9XG83
description Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1
trembl
ID A0A067KP16
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04619 PE=3 SV=1
Gene Ontology
ID GO:0005506
description gibberellin 2-beta-dioxygenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32121: 42144-43543
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003050_050 0.0 - - hypothetical protein JCGZ_04619 [Jatropha curcas]
2 Hb_001723_070 0.1431016631 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
3 Hb_162286_030 0.1501689684 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
4 Hb_000692_180 0.1557782736 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
5 Hb_000625_060 0.1561889126 - - Protein P21, putative [Ricinus communis]
6 Hb_001221_480 0.1613559195 - - metal ion binding protein, putative [Ricinus communis]
7 Hb_004452_080 0.1634745834 - - ring finger protein, putative [Ricinus communis]
8 Hb_001454_410 0.1648571379 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
9 Hb_001663_100 0.1680980457 - - -
10 Hb_000227_370 0.170020297 - - sugar transporter, putative [Ricinus communis]
11 Hb_010174_170 0.172725435 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X1 [Jatropha curcas]
12 Hb_001921_020 0.1731291104 desease resistance Gene Name: LRR_8 PREDICTED: disease resistance protein RPM1-like isoform X2 [Jatropha curcas]
13 Hb_007432_050 0.1737356317 transcription factor TF Family: MYB PREDICTED: transcription factor MYB108 [Jatropha curcas]
14 Hb_004657_040 0.1749006597 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
15 Hb_002236_070 0.1756242013 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH36-like [Jatropha curcas]
16 Hb_002027_310 0.1772150432 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001922_020 0.1792841249 - - conserved hypothetical protein [Ricinus communis]
18 Hb_022998_010 0.1804570621 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_004129_110 0.1814451457 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
20 Hb_000181_160 0.1824147322 - - PREDICTED: uncharacterized protein LOC105637575 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003050_050 Hb_003050_050 Hb_001723_070 Hb_001723_070 Hb_003050_050--Hb_001723_070 Hb_162286_030 Hb_162286_030 Hb_003050_050--Hb_162286_030 Hb_000692_180 Hb_000692_180 Hb_003050_050--Hb_000692_180 Hb_000625_060 Hb_000625_060 Hb_003050_050--Hb_000625_060 Hb_001221_480 Hb_001221_480 Hb_003050_050--Hb_001221_480 Hb_004452_080 Hb_004452_080 Hb_003050_050--Hb_004452_080 Hb_001723_070--Hb_162286_030 Hb_009778_050 Hb_009778_050 Hb_001723_070--Hb_009778_050 Hb_010174_170 Hb_010174_170 Hb_001723_070--Hb_010174_170 Hb_004079_110 Hb_004079_110 Hb_001723_070--Hb_004079_110 Hb_002110_060 Hb_002110_060 Hb_001723_070--Hb_002110_060 Hb_001621_020 Hb_001621_020 Hb_001723_070--Hb_001621_020 Hb_162286_030--Hb_001621_020 Hb_162286_030--Hb_002110_060 Hb_000009_130 Hb_000009_130 Hb_162286_030--Hb_000009_130 Hb_162286_030--Hb_010174_170 Hb_008215_010 Hb_008215_010 Hb_162286_030--Hb_008215_010 Hb_001663_100 Hb_001663_100 Hb_000692_180--Hb_001663_100 Hb_001424_080 Hb_001424_080 Hb_000692_180--Hb_001424_080 Hb_034342_010 Hb_034342_010 Hb_000692_180--Hb_034342_010 Hb_000720_110 Hb_000720_110 Hb_000692_180--Hb_000720_110 Hb_000462_020 Hb_000462_020 Hb_000692_180--Hb_000462_020 Hb_022998_010 Hb_022998_010 Hb_000692_180--Hb_022998_010 Hb_005186_090 Hb_005186_090 Hb_000625_060--Hb_005186_090 Hb_010578_050 Hb_010578_050 Hb_000625_060--Hb_010578_050 Hb_004657_040 Hb_004657_040 Hb_000625_060--Hb_004657_040 Hb_001514_210 Hb_001514_210 Hb_000625_060--Hb_001514_210 Hb_000030_260 Hb_000030_260 Hb_000625_060--Hb_000030_260 Hb_000625_060--Hb_162286_030 Hb_003807_020 Hb_003807_020 Hb_001221_480--Hb_003807_020 Hb_000649_030 Hb_000649_030 Hb_001221_480--Hb_000649_030 Hb_004447_020 Hb_004447_020 Hb_001221_480--Hb_004447_020 Hb_111582_010 Hb_111582_010 Hb_001221_480--Hb_111582_010 Hb_000335_050 Hb_000335_050 Hb_001221_480--Hb_000335_050 Hb_001454_410 Hb_001454_410 Hb_001221_480--Hb_001454_410 Hb_008705_040 Hb_008705_040 Hb_004452_080--Hb_008705_040 Hb_004452_080--Hb_022998_010 Hb_004021_100 Hb_004021_100 Hb_004452_080--Hb_004021_100 Hb_007432_050 Hb_007432_050 Hb_004452_080--Hb_007432_050 Hb_017491_040 Hb_017491_040 Hb_004452_080--Hb_017491_040 Hb_002236_070 Hb_002236_070 Hb_004452_080--Hb_002236_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0463238 1.88194 1.21016 1.02908 0.0360165 0.0163252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.084864 0 0.061968 3.50554 0

CAGE analysis