Hb_008705_040

Information

Type -
Description -
Location Contig8705: 25236-27618
Sequence    

Annotation

kegg
ID rcu:RCOM_0468520
description ATP binding protein, putative (EC:1.3.1.74)
nr
ID XP_012078013.1
description PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
swissprot
ID Q9C9N5
description Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 OS=Arabidopsis thaliana GN=At1g66830 PE=2 SV=1
trembl
ID A0A067KL57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13041 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable inactive leucine-rich repeat receptor-like protein kinase at1g66830

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61160: 26405-26952
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008705_040 0.0 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
2 Hb_039496_010 0.1052270441 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
3 Hb_004452_080 0.1108214987 - - ring finger protein, putative [Ricinus communis]
4 Hb_028008_030 0.1153421159 - - probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor [Malus domestica]
5 Hb_003805_080 0.1160055758 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
6 Hb_111147_010 0.1182473279 - - conserved hypothetical protein [Ricinus communis]
7 Hb_017491_040 0.1185497876 - - PREDICTED: uncharacterized protein LOC105631348 [Jatropha curcas]
8 Hb_003787_060 0.1330990511 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
9 Hb_001998_260 0.1352974815 - - cytochrome P450, putative [Ricinus communis]
10 Hb_003266_060 0.1383621447 - - PREDICTED: basic 7S globulin-like [Populus euphratica]
11 Hb_000407_080 0.1395491137 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
12 Hb_000934_290 0.1409245883 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003734_120 0.1420713418 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
14 Hb_002042_200 0.1426895695 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
15 Hb_001221_480 0.146279028 - - metal ion binding protein, putative [Ricinus communis]
16 Hb_000276_030 0.1473058643 - - dimethylaniline monooxygenase, putative [Ricinus communis]
17 Hb_001369_620 0.1474248788 - - PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
18 Hb_000852_050 0.1486602215 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
19 Hb_004129_110 0.1504413861 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
20 Hb_000300_170 0.150781243 - - PREDICTED: uncharacterized protein LOC105632565 [Jatropha curcas]

Gene co-expression network

sample Hb_008705_040 Hb_008705_040 Hb_039496_010 Hb_039496_010 Hb_008705_040--Hb_039496_010 Hb_004452_080 Hb_004452_080 Hb_008705_040--Hb_004452_080 Hb_028008_030 Hb_028008_030 Hb_008705_040--Hb_028008_030 Hb_003805_080 Hb_003805_080 Hb_008705_040--Hb_003805_080 Hb_111147_010 Hb_111147_010 Hb_008705_040--Hb_111147_010 Hb_017491_040 Hb_017491_040 Hb_008705_040--Hb_017491_040 Hb_003787_060 Hb_003787_060 Hb_039496_010--Hb_003787_060 Hb_039496_010--Hb_003805_080 Hb_000934_290 Hb_000934_290 Hb_039496_010--Hb_000934_290 Hb_000963_010 Hb_000963_010 Hb_039496_010--Hb_000963_010 Hb_039496_010--Hb_028008_030 Hb_003788_010 Hb_003788_010 Hb_039496_010--Hb_003788_010 Hb_022998_010 Hb_022998_010 Hb_004452_080--Hb_022998_010 Hb_004021_100 Hb_004021_100 Hb_004452_080--Hb_004021_100 Hb_007432_050 Hb_007432_050 Hb_004452_080--Hb_007432_050 Hb_004452_080--Hb_017491_040 Hb_002236_070 Hb_002236_070 Hb_004452_080--Hb_002236_070 Hb_028008_030--Hb_003805_080 Hb_000230_160 Hb_000230_160 Hb_028008_030--Hb_000230_160 Hb_001799_090 Hb_001799_090 Hb_028008_030--Hb_001799_090 Hb_001998_260 Hb_001998_260 Hb_028008_030--Hb_001998_260 Hb_003967_010 Hb_003967_010 Hb_028008_030--Hb_003967_010 Hb_003805_080--Hb_003787_060 Hb_188923_010 Hb_188923_010 Hb_003805_080--Hb_188923_010 Hb_003805_080--Hb_000230_160 Hb_003058_180 Hb_003058_180 Hb_003805_080--Hb_003058_180 Hb_003734_120 Hb_003734_120 Hb_111147_010--Hb_003734_120 Hb_111147_010--Hb_039496_010 Hb_006618_080 Hb_006618_080 Hb_111147_010--Hb_006618_080 Hb_111147_010--Hb_003805_080 Hb_111147_010--Hb_003787_060 Hb_017491_040--Hb_004021_100 Hb_002042_200 Hb_002042_200 Hb_017491_040--Hb_002042_200 Hb_001623_400 Hb_001623_400 Hb_017491_040--Hb_001623_400 Hb_166813_010 Hb_166813_010 Hb_017491_040--Hb_166813_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.628213 0.204311 0.756087 0.0168033 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.42195 0.0339874

CAGE analysis