Hb_004452_080

Information

Type -
Description -
Location Contig4452: 80385-81185
Sequence    

Annotation

kegg
ID rcu:RCOM_0554190
description ring finger protein, putative
nr
ID XP_002525140.1
description ring finger protein, putative [Ricinus communis]
swissprot
ID Q9SLC3
description E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana GN=ATL41 PE=1 SV=1
trembl
ID B9SGM1
description Ring finger protein, putative OS=Ricinus communis GN=RCOM_0554190 PE=4 SV=1
Gene Ontology
ID GO:0046872
description e3 ubiquitin-protein ligase atl41-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004452_080 0.0 - - ring finger protein, putative [Ricinus communis]
2 Hb_008705_040 0.1108214987 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
3 Hb_022998_010 0.1226256932 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_004021_100 0.1283000706 - - -
5 Hb_007432_050 0.1306400964 transcription factor TF Family: MYB PREDICTED: transcription factor MYB108 [Jatropha curcas]
6 Hb_017491_040 0.1315807951 - - PREDICTED: uncharacterized protein LOC105631348 [Jatropha curcas]
7 Hb_002236_070 0.1356289637 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH36-like [Jatropha curcas]
8 Hb_002217_210 0.1361492694 - - -
9 Hb_001922_020 0.139921779 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008695_130 0.150412888 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003768_110 0.1526278177 - - hypothetical protein POPTR_0004s12230g [Populus trichocarpa]
12 Hb_004129_110 0.1535484832 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
13 Hb_111147_010 0.1539109265 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000649_030 0.155114128 - - scab resistance family protein [Populus trichocarpa]
15 Hb_001221_480 0.1566877892 - - metal ion binding protein, putative [Ricinus communis]
16 Hb_000993_020 0.1598285658 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
17 Hb_003050_050 0.1634745834 - - hypothetical protein JCGZ_04619 [Jatropha curcas]
18 Hb_000407_080 0.1636557426 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
19 Hb_001663_100 0.1645929821 - - -
20 Hb_000022_280 0.1656963008 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]

Gene co-expression network

sample Hb_004452_080 Hb_004452_080 Hb_008705_040 Hb_008705_040 Hb_004452_080--Hb_008705_040 Hb_022998_010 Hb_022998_010 Hb_004452_080--Hb_022998_010 Hb_004021_100 Hb_004021_100 Hb_004452_080--Hb_004021_100 Hb_007432_050 Hb_007432_050 Hb_004452_080--Hb_007432_050 Hb_017491_040 Hb_017491_040 Hb_004452_080--Hb_017491_040 Hb_002236_070 Hb_002236_070 Hb_004452_080--Hb_002236_070 Hb_039496_010 Hb_039496_010 Hb_008705_040--Hb_039496_010 Hb_028008_030 Hb_028008_030 Hb_008705_040--Hb_028008_030 Hb_003805_080 Hb_003805_080 Hb_008705_040--Hb_003805_080 Hb_111147_010 Hb_111147_010 Hb_008705_040--Hb_111147_010 Hb_008705_040--Hb_017491_040 Hb_126077_020 Hb_126077_020 Hb_022998_010--Hb_126077_020 Hb_001663_100 Hb_001663_100 Hb_022998_010--Hb_001663_100 Hb_022998_010--Hb_007432_050 Hb_000649_030 Hb_000649_030 Hb_022998_010--Hb_000649_030 Hb_034342_010 Hb_034342_010 Hb_022998_010--Hb_034342_010 Hb_003556_060 Hb_003556_060 Hb_022998_010--Hb_003556_060 Hb_004021_100--Hb_017491_040 Hb_058526_010 Hb_058526_010 Hb_004021_100--Hb_058526_010 Hb_003064_010 Hb_003064_010 Hb_004021_100--Hb_003064_010 Hb_127743_030 Hb_127743_030 Hb_004021_100--Hb_127743_030 Hb_004021_100--Hb_007432_050 Hb_003166_040 Hb_003166_040 Hb_004021_100--Hb_003166_040 Hb_007432_050--Hb_127743_030 Hb_007432_050--Hb_003166_040 Hb_007432_050--Hb_000649_030 Hb_002374_110 Hb_002374_110 Hb_007432_050--Hb_002374_110 Hb_007432_050--Hb_058526_010 Hb_002042_200 Hb_002042_200 Hb_017491_040--Hb_002042_200 Hb_001623_400 Hb_001623_400 Hb_017491_040--Hb_001623_400 Hb_166813_010 Hb_166813_010 Hb_017491_040--Hb_166813_010 Hb_000407_080 Hb_000407_080 Hb_002236_070--Hb_000407_080 Hb_006020_010 Hb_006020_010 Hb_002236_070--Hb_006020_010 Hb_004635_040 Hb_004635_040 Hb_002236_070--Hb_004635_040 Hb_001922_020 Hb_001922_020 Hb_002236_070--Hb_001922_020 Hb_013914_020 Hb_013914_020 Hb_002236_070--Hb_013914_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0541175 0.0233628 0.049367 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.10721 0

CAGE analysis