Hb_003025_010

Information

Type -
Description -
Location Contig3025: 3891-7119
Sequence    

Annotation

kegg
ID pop:POPTR_0011s10410g
description hypothetical protein
nr
ID XP_011006847.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X2 [Populus euphratica]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID U5FZE3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s10410g PE=3 SV=1
Gene Ontology
ID GO:0016020
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003025_010 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X2 [Populus euphratica]
2 Hb_006054_020 0.1500902365 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001921_020 0.1859161475 desease resistance Gene Name: LRR_8 PREDICTED: disease resistance protein RPM1-like isoform X2 [Jatropha curcas]
4 Hb_004102_050 0.1956503734 - - JHL25H03.10 [Jatropha curcas]
5 Hb_048476_010 0.2169838684 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Citrus sinensis]
6 Hb_080147_060 0.2192027991 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
7 Hb_000191_160 0.2264502447 - - hypothetical protein EUGRSUZ_C03547 [Eucalyptus grandis]
8 Hb_000556_140 0.2389096986 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 9 [Jatropha curcas]
9 Hb_000029_420 0.243687512 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
10 Hb_111985_160 0.2445117217 - - hypothetical protein B456_010G008900 [Gossypium raimondii]
11 Hb_004055_080 0.249956076 - - calmodulin binding protein, putative [Ricinus communis]
12 Hb_011214_120 0.2505993435 - - PREDICTED: uncharacterized protein LOC105636139 [Jatropha curcas]
13 Hb_111693_010 0.2512590286 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
14 Hb_042083_060 0.2522624123 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
15 Hb_001959_030 0.2526551112 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002072_020 0.2534026183 - - hypothetical protein JCGZ_16057 [Jatropha curcas]
17 Hb_009771_070 0.2536273217 - - hypothetical protein POPTR_0016s12140g [Populus trichocarpa]
18 Hb_014834_020 0.2544465713 - - PREDICTED: WAT1-related protein At5g47470-like isoform X1 [Jatropha curcas]
19 Hb_046417_010 0.2548282466 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
20 Hb_003064_010 0.2562655866 - - Senescence-related gene 1 [Theobroma cacao]

Gene co-expression network

sample Hb_003025_010 Hb_003025_010 Hb_006054_020 Hb_006054_020 Hb_003025_010--Hb_006054_020 Hb_001921_020 Hb_001921_020 Hb_003025_010--Hb_001921_020 Hb_004102_050 Hb_004102_050 Hb_003025_010--Hb_004102_050 Hb_048476_010 Hb_048476_010 Hb_003025_010--Hb_048476_010 Hb_080147_060 Hb_080147_060 Hb_003025_010--Hb_080147_060 Hb_000191_160 Hb_000191_160 Hb_003025_010--Hb_000191_160 Hb_006054_020--Hb_004102_050 Hb_006054_020--Hb_001921_020 Hb_006054_020--Hb_000191_160 Hb_046417_010 Hb_046417_010 Hb_006054_020--Hb_046417_010 Hb_001486_140 Hb_001486_140 Hb_006054_020--Hb_001486_140 Hb_002374_110 Hb_002374_110 Hb_001921_020--Hb_002374_110 Hb_002843_010 Hb_002843_010 Hb_001921_020--Hb_002843_010 Hb_127743_030 Hb_127743_030 Hb_001921_020--Hb_127743_030 Hb_001723_070 Hb_001723_070 Hb_001921_020--Hb_001723_070 Hb_001921_020--Hb_048476_010 Hb_007432_050 Hb_007432_050 Hb_001921_020--Hb_007432_050 Hb_007527_030 Hb_007527_030 Hb_004102_050--Hb_007527_030 Hb_004102_050--Hb_001486_140 Hb_004102_050--Hb_000191_160 Hb_011377_010 Hb_011377_010 Hb_004102_050--Hb_011377_010 Hb_002072_020 Hb_002072_020 Hb_048476_010--Hb_002072_020 Hb_027634_010 Hb_027634_010 Hb_048476_010--Hb_027634_010 Hb_001640_020 Hb_001640_020 Hb_048476_010--Hb_001640_020 Hb_001959_030 Hb_001959_030 Hb_048476_010--Hb_001959_030 Hb_004122_030 Hb_004122_030 Hb_048476_010--Hb_004122_030 Hb_002597_010 Hb_002597_010 Hb_080147_060--Hb_002597_010 Hb_000003_510 Hb_000003_510 Hb_080147_060--Hb_000003_510 Hb_000041_290 Hb_000041_290 Hb_080147_060--Hb_000041_290 Hb_002016_020 Hb_002016_020 Hb_080147_060--Hb_002016_020 Hb_000580_070 Hb_000580_070 Hb_080147_060--Hb_000580_070 Hb_080147_060--Hb_001959_030 Hb_006920_040 Hb_006920_040 Hb_000191_160--Hb_006920_040 Hb_000191_160--Hb_007527_030 Hb_002553_100 Hb_002553_100 Hb_000191_160--Hb_002553_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0140367 0.033062 0.0674637 0.0444201 0 0.02806
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.190925 0

CAGE analysis