Hb_004162_010

Information

Type -
Description -
Location Contig4162: 2050-3333
Sequence    

Annotation

kegg
ID rcu:RCOM_0476330
description hypothetical protein
nr
ID XP_002523755.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SCN6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0476330 PE=4 SV=1
Gene Ontology
ID GO:0005739
description mitochondrial atpase complex subunit atp10 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004162_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001623_090 0.2121752603 - - PREDICTED: probable serine incorporator [Jatropha curcas]
3 Hb_003185_090 0.2190339605 - - Boron transporter, putative [Ricinus communis]
4 Hb_002027_310 0.2330408426 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010921_090 0.2371399769 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
6 Hb_004657_040 0.2536773616 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
7 Hb_004286_030 0.2598804191 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
8 Hb_007676_020 0.2609728892 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 isoform X1 [Jatropha curcas]
9 Hb_005186_090 0.2623723679 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_004195_110 0.2642753233 - - hypothetical protein JCGZ_24010 [Jatropha curcas]
11 Hb_000625_060 0.2681767447 - - Protein P21, putative [Ricinus communis]
12 Hb_000914_130 0.2714798761 - - copper-transporting atpase p-type, putative [Ricinus communis]
13 Hb_001921_020 0.2731044656 desease resistance Gene Name: LRR_8 PREDICTED: disease resistance protein RPM1-like isoform X2 [Jatropha curcas]
14 Hb_059379_020 0.273500363 - - PREDICTED: caffeic acid 3-O-methyltransferase 1-like [Populus euphratica]
15 Hb_000227_370 0.2748094013 - - sugar transporter, putative [Ricinus communis]
16 Hb_029584_090 0.2786646026 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
17 Hb_001842_060 0.279129471 desease resistance Gene Name: ABC_trans_N hypothetical protein JCGZ_10908 [Jatropha curcas]
18 Hb_001206_090 0.2792070797 - - pyruvate decarboxylase [Hevea brasiliensis]
19 Hb_002498_040 0.2819829014 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
20 Hb_003050_050 0.2853368668 - - hypothetical protein JCGZ_04619 [Jatropha curcas]

Gene co-expression network

sample Hb_004162_010 Hb_004162_010 Hb_001623_090 Hb_001623_090 Hb_004162_010--Hb_001623_090 Hb_003185_090 Hb_003185_090 Hb_004162_010--Hb_003185_090 Hb_002027_310 Hb_002027_310 Hb_004162_010--Hb_002027_310 Hb_010921_090 Hb_010921_090 Hb_004162_010--Hb_010921_090 Hb_004657_040 Hb_004657_040 Hb_004162_010--Hb_004657_040 Hb_004286_030 Hb_004286_030 Hb_004162_010--Hb_004286_030 Hb_001623_090--Hb_003185_090 Hb_000926_100 Hb_000926_100 Hb_001623_090--Hb_000926_100 Hb_004495_020 Hb_004495_020 Hb_001623_090--Hb_004495_020 Hb_002025_350 Hb_002025_350 Hb_001623_090--Hb_002025_350 Hb_006788_010 Hb_006788_010 Hb_001623_090--Hb_006788_010 Hb_012754_020 Hb_012754_020 Hb_003185_090--Hb_012754_020 Hb_000227_370 Hb_000227_370 Hb_003185_090--Hb_000227_370 Hb_001022_050 Hb_001022_050 Hb_003185_090--Hb_001022_050 Hb_000914_130 Hb_000914_130 Hb_003185_090--Hb_000914_130 Hb_002376_030 Hb_002376_030 Hb_002027_310--Hb_002376_030 Hb_000220_170 Hb_000220_170 Hb_002027_310--Hb_000220_170 Hb_013652_010 Hb_013652_010 Hb_002027_310--Hb_013652_010 Hb_002374_110 Hb_002374_110 Hb_002027_310--Hb_002374_110 Hb_001723_070 Hb_001723_070 Hb_002027_310--Hb_001723_070 Hb_003050_050 Hb_003050_050 Hb_002027_310--Hb_003050_050 Hb_011861_110 Hb_011861_110 Hb_010921_090--Hb_011861_110 Hb_000610_020 Hb_000610_020 Hb_010921_090--Hb_000610_020 Hb_001486_150 Hb_001486_150 Hb_010921_090--Hb_001486_150 Hb_004007_120 Hb_004007_120 Hb_010921_090--Hb_004007_120 Hb_073096_010 Hb_073096_010 Hb_010921_090--Hb_073096_010 Hb_000181_160 Hb_000181_160 Hb_004657_040--Hb_000181_160 Hb_000625_060 Hb_000625_060 Hb_004657_040--Hb_000625_060 Hb_002686_390 Hb_002686_390 Hb_004657_040--Hb_002686_390 Hb_001408_050 Hb_001408_050 Hb_004657_040--Hb_001408_050 Hb_001514_210 Hb_001514_210 Hb_004657_040--Hb_001514_210 Hb_009823_010 Hb_009823_010 Hb_004657_040--Hb_009823_010 Hb_002662_090 Hb_002662_090 Hb_004286_030--Hb_002662_090 Hb_000051_030 Hb_000051_030 Hb_004286_030--Hb_000051_030 Hb_010578_050 Hb_010578_050 Hb_004286_030--Hb_010578_050 Hb_001842_060 Hb_001842_060 Hb_004286_030--Hb_001842_060 Hb_005186_090 Hb_005186_090 Hb_004286_030--Hb_005186_090 Hb_004286_030--Hb_000625_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.711889 0.446713 0.248219 0 0.142094
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.145334 0.235362 1.17481 0

CAGE analysis