Hb_003185_090

Information

Type -
Description -
Location Contig3185: 43803-47669
Sequence    

Annotation

kegg
ID rcu:RCOM_1053890
description Boron transporter, putative
nr
ID XP_002514365.1
description Boron transporter, putative [Ricinus communis]
swissprot
ID Q9XI23
description Boron transporter 4 OS=Arabidopsis thaliana GN=BOR4 PE=2 SV=1
trembl
ID B9RK11
description Boron transporter, putative OS=Ricinus communis GN=RCOM_1053890 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable boron transporter 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33602: 44574-45132 , PASA_asmbl_33603: 46577-47416
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003185_090 0.0 - - Boron transporter, putative [Ricinus communis]
2 Hb_001623_090 0.1844478064 - - PREDICTED: probable serine incorporator [Jatropha curcas]
3 Hb_012754_020 0.2020277393 - - PREDICTED: uncharacterized protein LOC104229837 [Nicotiana sylvestris]
4 Hb_000227_370 0.202866219 - - sugar transporter, putative [Ricinus communis]
5 Hb_001022_050 0.2079504582 - - hypothetical protein POPTR_0016s07780g [Populus trichocarpa]
6 Hb_000914_130 0.2094800326 - - copper-transporting atpase p-type, putative [Ricinus communis]
7 Hb_004162_010 0.2190339605 - - conserved hypothetical protein [Ricinus communis]
8 Hb_068576_010 0.2191914998 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
9 Hb_002477_100 0.2200282705 - - PREDICTED: protein Brevis radix-like 2 [Jatropha curcas]
10 Hb_002597_020 0.2206696054 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
11 Hb_042083_060 0.2216888198 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
12 Hb_003050_050 0.228671909 - - hypothetical protein JCGZ_04619 [Jatropha curcas]
13 Hb_002027_310 0.2378970951 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001922_020 0.240406464 - - conserved hypothetical protein [Ricinus communis]
15 Hb_029584_090 0.240506819 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
16 Hb_000051_030 0.2411618148 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
17 Hb_003413_020 0.2439831177 - - -
18 Hb_002025_350 0.2443205696 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
19 Hb_001318_110 0.2455054317 - - PREDICTED: uncharacterized protein LOC105642677 [Jatropha curcas]
20 Hb_010598_010 0.2463544788 - - PREDICTED: ankyrin-1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003185_090 Hb_003185_090 Hb_001623_090 Hb_001623_090 Hb_003185_090--Hb_001623_090 Hb_012754_020 Hb_012754_020 Hb_003185_090--Hb_012754_020 Hb_000227_370 Hb_000227_370 Hb_003185_090--Hb_000227_370 Hb_001022_050 Hb_001022_050 Hb_003185_090--Hb_001022_050 Hb_000914_130 Hb_000914_130 Hb_003185_090--Hb_000914_130 Hb_004162_010 Hb_004162_010 Hb_003185_090--Hb_004162_010 Hb_001623_090--Hb_004162_010 Hb_000926_100 Hb_000926_100 Hb_001623_090--Hb_000926_100 Hb_004495_020 Hb_004495_020 Hb_001623_090--Hb_004495_020 Hb_002025_350 Hb_002025_350 Hb_001623_090--Hb_002025_350 Hb_006788_010 Hb_006788_010 Hb_001623_090--Hb_006788_010 Hb_000985_070 Hb_000985_070 Hb_012754_020--Hb_000985_070 Hb_000302_210 Hb_000302_210 Hb_012754_020--Hb_000302_210 Hb_001493_160 Hb_001493_160 Hb_012754_020--Hb_001493_160 Hb_164162_010 Hb_164162_010 Hb_012754_020--Hb_164162_010 Hb_000125_220 Hb_000125_220 Hb_012754_020--Hb_000125_220 Hb_000009_130 Hb_000009_130 Hb_000227_370--Hb_000009_130 Hb_000227_370--Hb_002025_350 Hb_162286_030 Hb_162286_030 Hb_000227_370--Hb_162286_030 Hb_002110_060 Hb_002110_060 Hb_000227_370--Hb_002110_060 Hb_004657_040 Hb_004657_040 Hb_000227_370--Hb_004657_040 Hb_008695_130 Hb_008695_130 Hb_000227_370--Hb_008695_130 Hb_023278_030 Hb_023278_030 Hb_001022_050--Hb_023278_030 Hb_127416_010 Hb_127416_010 Hb_001022_050--Hb_127416_010 Hb_000005_340 Hb_000005_340 Hb_001022_050--Hb_000005_340 Hb_000057_080 Hb_000057_080 Hb_001022_050--Hb_000057_080 Hb_000002_350 Hb_000002_350 Hb_001022_050--Hb_000002_350 Hb_019863_030 Hb_019863_030 Hb_001022_050--Hb_019863_030 Hb_000130_080 Hb_000130_080 Hb_000914_130--Hb_000130_080 Hb_004007_120 Hb_004007_120 Hb_000914_130--Hb_004007_120 Hb_008215_010 Hb_008215_010 Hb_000914_130--Hb_008215_010 Hb_005649_010 Hb_005649_010 Hb_000914_130--Hb_005649_010 Hb_000914_130--Hb_000227_370 Hb_000120_070 Hb_000120_070 Hb_000914_130--Hb_000120_070 Hb_002027_310 Hb_002027_310 Hb_004162_010--Hb_002027_310 Hb_010921_090 Hb_010921_090 Hb_004162_010--Hb_010921_090 Hb_004162_010--Hb_004657_040 Hb_004286_030 Hb_004286_030 Hb_004162_010--Hb_004286_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.482682 0.536282 0.332324 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.021149 0.049923 0.158024 0.721247 0

CAGE analysis