Hb_000926_100

Information

Type -
Description -
Location Contig926: 111772-121931
Sequence    

Annotation

kegg
ID rcu:RCOM_1303610
description imidazole glycerol phosphate synthase subunit hisf, putative (EC:5.3.1.16)
nr
ID KJB40775.1
description hypothetical protein B456_007G076800 [Gossypium raimondii]
swissprot
ID Q9SZ30
description Imidazole glycerol phosphate synthase hisHF, chloroplastic OS=Arabidopsis thaliana GN=HISN4 PE=2 SV=1
trembl
ID A0A0D2TAV2
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G076800 PE=4 SV=1
Gene Ontology
ID GO:0003824
description imidazole glycerol phosphate synthase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62662: 119734-120012
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000926_100 0.0 - - hypothetical protein B456_007G076800 [Gossypium raimondii]
2 Hb_000450_160 0.213748622 - - hypothetical protein JCGZ_16746 [Jatropha curcas]
3 Hb_001623_090 0.2169046845 - - PREDICTED: probable serine incorporator [Jatropha curcas]
4 Hb_003972_060 0.2282911793 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
5 Hb_029921_030 0.2303491225 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002998_070 0.2317944329 - - hypothetical protein CARUB_v10019139mg, partial [Capsella rubella]
7 Hb_003680_210 0.2393435458 transcription factor TF Family: Trihelix PREDICTED: stress response protein NST1 [Jatropha curcas]
8 Hb_000320_300 0.2424957752 - - prephenate dehydratase, putative [Ricinus communis]
9 Hb_021576_020 0.247383908 - - PREDICTED: uncharacterized protein LOC104426132 [Eucalyptus grandis]
10 Hb_007919_020 0.250438457 - - electron transporter, putative [Ricinus communis]
11 Hb_003464_070 0.2531005546 transcription factor TF Family: Trihelix PREDICTED: stress response protein NST1 [Jatropha curcas]
12 Hb_002027_030 0.2531922823 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001140_360 0.2553161974 - - -
14 Hb_001946_220 0.256477512 - - PREDICTED: signal peptidase complex catalytic subunit SEC11A-like [Jatropha curcas]
15 Hb_009571_010 0.2565436732 - - early-responsive to dehydration family protein [Populus trichocarpa]
16 Hb_005725_050 0.2583324451 - - PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
17 Hb_001699_200 0.2587613746 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
18 Hb_007153_040 0.265126899 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
19 Hb_000086_670 0.2655808847 - - PREDICTED: probable DNA helicase MCM9 [Jatropha curcas]
20 Hb_015057_050 0.2705949626 - - D-alanine aminotransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000926_100 Hb_000926_100 Hb_000450_160 Hb_000450_160 Hb_000926_100--Hb_000450_160 Hb_001623_090 Hb_001623_090 Hb_000926_100--Hb_001623_090 Hb_003972_060 Hb_003972_060 Hb_000926_100--Hb_003972_060 Hb_029921_030 Hb_029921_030 Hb_000926_100--Hb_029921_030 Hb_002998_070 Hb_002998_070 Hb_000926_100--Hb_002998_070 Hb_003680_210 Hb_003680_210 Hb_000926_100--Hb_003680_210 Hb_000450_160--Hb_002998_070 Hb_006538_190 Hb_006538_190 Hb_000450_160--Hb_006538_190 Hb_004724_450 Hb_004724_450 Hb_000450_160--Hb_004724_450 Hb_001675_030 Hb_001675_030 Hb_000450_160--Hb_001675_030 Hb_000270_740 Hb_000270_740 Hb_000450_160--Hb_000270_740 Hb_003185_090 Hb_003185_090 Hb_001623_090--Hb_003185_090 Hb_004162_010 Hb_004162_010 Hb_001623_090--Hb_004162_010 Hb_004495_020 Hb_004495_020 Hb_001623_090--Hb_004495_020 Hb_002025_350 Hb_002025_350 Hb_001623_090--Hb_002025_350 Hb_006788_010 Hb_006788_010 Hb_001623_090--Hb_006788_010 Hb_164926_040 Hb_164926_040 Hb_003972_060--Hb_164926_040 Hb_000139_140 Hb_000139_140 Hb_003972_060--Hb_000139_140 Hb_000165_200 Hb_000165_200 Hb_003972_060--Hb_000165_200 Hb_004330_080 Hb_004330_080 Hb_003972_060--Hb_004330_080 Hb_000220_110 Hb_000220_110 Hb_003972_060--Hb_000220_110 Hb_002518_090 Hb_002518_090 Hb_003972_060--Hb_002518_090 Hb_011633_040 Hb_011633_040 Hb_029921_030--Hb_011633_040 Hb_002471_260 Hb_002471_260 Hb_029921_030--Hb_002471_260 Hb_029921_030--Hb_003972_060 Hb_001776_190 Hb_001776_190 Hb_029921_030--Hb_001776_190 Hb_000421_270 Hb_000421_270 Hb_029921_030--Hb_000421_270 Hb_029921_030--Hb_006538_190 Hb_002249_070 Hb_002249_070 Hb_002998_070--Hb_002249_070 Hb_003464_070 Hb_003464_070 Hb_002998_070--Hb_003464_070 Hb_005181_160 Hb_005181_160 Hb_002998_070--Hb_005181_160 Hb_075247_010 Hb_075247_010 Hb_002998_070--Hb_075247_010 Hb_001221_330 Hb_001221_330 Hb_002998_070--Hb_001221_330 Hb_003680_210--Hb_003972_060 Hb_028872_160 Hb_028872_160 Hb_003680_210--Hb_028872_160 Hb_027746_020 Hb_027746_020 Hb_003680_210--Hb_027746_020 Hb_003680_210--Hb_003464_070 Hb_002685_150 Hb_002685_150 Hb_003680_210--Hb_002685_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0197491 0.0526254 0.165755 0.19137 0.0185067 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0451637 0.0710481 0.131531 0.32788 0

CAGE analysis