Hb_003680_210

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig3680: 228470-230645
Sequence    

Annotation

kegg
ID rcu:RCOM_0840720
description hypothetical protein
nr
ID XP_012082541.1
description PREDICTED: stress response protein NST1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K2K0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16627 PE=4 SV=1
Gene Ontology
ID GO:0006950
description stress response protein nst1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003680_210 0.0 transcription factor TF Family: Trihelix PREDICTED: stress response protein NST1 [Jatropha curcas]
2 Hb_003972_060 0.2007304919 - - PREDICTED: UDP-arabinopyranose mutase 3 [Populus euphratica]
3 Hb_028872_160 0.2025753504 - - PREDICTED: ATP-dependent DNA helicase Q-like 5 [Jatropha curcas]
4 Hb_027746_020 0.2243020572 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit B [Jatropha curcas]
5 Hb_003464_070 0.2270858018 transcription factor TF Family: Trihelix PREDICTED: stress response protein NST1 [Jatropha curcas]
6 Hb_002685_150 0.2382604183 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
7 Hb_000926_100 0.2393435458 - - hypothetical protein B456_007G076800 [Gossypium raimondii]
8 Hb_000317_160 0.2427170542 - - 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Theobroma cacao]
9 Hb_000086_670 0.2428960948 - - PREDICTED: probable DNA helicase MCM9 [Jatropha curcas]
10 Hb_001080_050 0.2432800622 - - PREDICTED: uncharacterized protein LOC105635235 [Jatropha curcas]
11 Hb_164926_040 0.2453258272 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
12 Hb_001472_110 0.2533778304 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
13 Hb_004137_100 0.2546652962 - - PREDICTED: alcohol dehydrogenase 1 [Jatropha curcas]
14 Hb_010872_040 0.2556008812 - - hypothetical protein F775_31993 [Aegilops tauschii]
15 Hb_005725_050 0.2584404427 - - PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
16 Hb_005725_230 0.258686254 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
17 Hb_004774_030 0.2595872735 - - PREDICTED: uncharacterized protein LOC105648177 [Jatropha curcas]
18 Hb_001769_060 0.2603887427 - - PREDICTED: F-box protein At3g12350 isoform X1 [Jatropha curcas]
19 Hb_007002_040 0.2619446302 transcription factor TF Family: PHD DNA replication regulator dpb11, putative [Ricinus communis]
20 Hb_003813_060 0.2623648369 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003680_210 Hb_003680_210 Hb_003972_060 Hb_003972_060 Hb_003680_210--Hb_003972_060 Hb_028872_160 Hb_028872_160 Hb_003680_210--Hb_028872_160 Hb_027746_020 Hb_027746_020 Hb_003680_210--Hb_027746_020 Hb_003464_070 Hb_003464_070 Hb_003680_210--Hb_003464_070 Hb_002685_150 Hb_002685_150 Hb_003680_210--Hb_002685_150 Hb_000926_100 Hb_000926_100 Hb_003680_210--Hb_000926_100 Hb_164926_040 Hb_164926_040 Hb_003972_060--Hb_164926_040 Hb_000139_140 Hb_000139_140 Hb_003972_060--Hb_000139_140 Hb_000165_200 Hb_000165_200 Hb_003972_060--Hb_000165_200 Hb_004330_080 Hb_004330_080 Hb_003972_060--Hb_004330_080 Hb_000220_110 Hb_000220_110 Hb_003972_060--Hb_000220_110 Hb_002518_090 Hb_002518_090 Hb_003972_060--Hb_002518_090 Hb_004032_210 Hb_004032_210 Hb_028872_160--Hb_004032_210 Hb_007002_040 Hb_007002_040 Hb_028872_160--Hb_007002_040 Hb_000307_220 Hb_000307_220 Hb_028872_160--Hb_000307_220 Hb_000032_250 Hb_000032_250 Hb_028872_160--Hb_000032_250 Hb_011214_110 Hb_011214_110 Hb_028872_160--Hb_011214_110 Hb_028872_160--Hb_002518_090 Hb_009193_090 Hb_009193_090 Hb_027746_020--Hb_009193_090 Hb_133004_010 Hb_133004_010 Hb_027746_020--Hb_133004_010 Hb_002676_120 Hb_002676_120 Hb_027746_020--Hb_002676_120 Hb_007545_120 Hb_007545_120 Hb_027746_020--Hb_007545_120 Hb_003050_260 Hb_003050_260 Hb_027746_020--Hb_003050_260 Hb_004137_100 Hb_004137_100 Hb_027746_020--Hb_004137_100 Hb_000038_120 Hb_000038_120 Hb_003464_070--Hb_000038_120 Hb_003464_070--Hb_002685_150 Hb_001767_130 Hb_001767_130 Hb_003464_070--Hb_001767_130 Hb_001584_260 Hb_001584_260 Hb_003464_070--Hb_001584_260 Hb_011930_150 Hb_011930_150 Hb_003464_070--Hb_011930_150 Hb_002998_070 Hb_002998_070 Hb_003464_070--Hb_002998_070 Hb_000317_160 Hb_000317_160 Hb_002685_150--Hb_000317_160 Hb_005725_230 Hb_005725_230 Hb_002685_150--Hb_005725_230 Hb_009615_020 Hb_009615_020 Hb_002685_150--Hb_009615_020 Hb_002685_150--Hb_027746_020 Hb_000023_160 Hb_000023_160 Hb_002685_150--Hb_000023_160 Hb_000450_160 Hb_000450_160 Hb_000926_100--Hb_000450_160 Hb_001623_090 Hb_001623_090 Hb_000926_100--Hb_001623_090 Hb_000926_100--Hb_003972_060 Hb_029921_030 Hb_029921_030 Hb_000926_100--Hb_029921_030 Hb_000926_100--Hb_002998_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.51688 0.510517 8.08068 10.1775 0.732074 1.71329
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.419496 1.36419 3.40165 12.4209 0.323449

CAGE analysis