Hb_002998_070

Information

Type -
Description -
Location Contig2998: 73605-77203
Sequence    

Annotation

kegg
ID crb:CARUB_v10019139mg
description hypothetical protein
nr
ID XP_006292878.1
description hypothetical protein CARUB_v10019139mg, partial [Capsella rubella]
swissprot
ID -
description -
trembl
ID R0FTH5
description Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10019139mg PE=4 SV=1
Gene Ontology
ID GO:0005623
description vacuolar protein-sorting-associated protein 33 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31331: 76566-76742 , PASA_asmbl_31332: 76878-77667
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002998_070 0.0 - - hypothetical protein CARUB_v10019139mg, partial [Capsella rubella]
2 Hb_002249_070 0.1958343114 - - gcn4-complementing protein, putative [Ricinus communis]
3 Hb_003464_070 0.1961603994 transcription factor TF Family: Trihelix PREDICTED: stress response protein NST1 [Jatropha curcas]
4 Hb_005181_160 0.2045024993 - - PREDICTED: uncharacterized protein LOC105643546 [Jatropha curcas]
5 Hb_075247_010 0.2047114501 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
6 Hb_000450_160 0.2108153859 - - hypothetical protein JCGZ_16746 [Jatropha curcas]
7 Hb_001221_330 0.2123642174 - - PREDICTED: uncharacterized protein LOC105648791 [Jatropha curcas]
8 Hb_021576_020 0.2140400425 - - PREDICTED: uncharacterized protein LOC104426132 [Eucalyptus grandis]
9 Hb_110390_010 0.2145946948 - - hypothetical protein JCGZ_19741 [Jatropha curcas]
10 Hb_001638_230 0.2160730705 - - RNA-binding region-containing protein, putative [Ricinus communis]
11 Hb_062038_010 0.221111843 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC104882266 isoform X2 [Vitis vinifera]
12 Hb_002863_030 0.2229108195 - - unknown [Populus trichocarpa x Populus deltoides]
13 Hb_005306_010 0.225120336 - - -
14 Hb_000487_120 0.2253009441 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000368_030 0.2256640404 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
16 Hb_001554_010 0.2261865806 - - PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
17 Hb_002685_150 0.2263593566 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
18 Hb_000788_060 0.2295806589 - - PREDICTED: uncharacterized protein LOC105629705 [Jatropha curcas]
19 Hb_000926_100 0.2317944329 - - hypothetical protein B456_007G076800 [Gossypium raimondii]
20 Hb_000382_020 0.2323413915 - - PREDICTED: uncharacterized protein LOC105633610 [Jatropha curcas]

Gene co-expression network

sample Hb_002998_070 Hb_002998_070 Hb_002249_070 Hb_002249_070 Hb_002998_070--Hb_002249_070 Hb_003464_070 Hb_003464_070 Hb_002998_070--Hb_003464_070 Hb_005181_160 Hb_005181_160 Hb_002998_070--Hb_005181_160 Hb_075247_010 Hb_075247_010 Hb_002998_070--Hb_075247_010 Hb_000450_160 Hb_000450_160 Hb_002998_070--Hb_000450_160 Hb_001221_330 Hb_001221_330 Hb_002998_070--Hb_001221_330 Hb_012305_130 Hb_012305_130 Hb_002249_070--Hb_012305_130 Hb_000110_120 Hb_000110_120 Hb_002249_070--Hb_000110_120 Hb_000270_180 Hb_000270_180 Hb_002249_070--Hb_000270_180 Hb_021409_080 Hb_021409_080 Hb_002249_070--Hb_021409_080 Hb_000382_020 Hb_000382_020 Hb_002249_070--Hb_000382_020 Hb_002863_030 Hb_002863_030 Hb_002249_070--Hb_002863_030 Hb_000038_120 Hb_000038_120 Hb_003464_070--Hb_000038_120 Hb_002685_150 Hb_002685_150 Hb_003464_070--Hb_002685_150 Hb_001767_130 Hb_001767_130 Hb_003464_070--Hb_001767_130 Hb_001584_260 Hb_001584_260 Hb_003464_070--Hb_001584_260 Hb_011930_150 Hb_011930_150 Hb_003464_070--Hb_011930_150 Hb_000025_370 Hb_000025_370 Hb_005181_160--Hb_000025_370 Hb_005181_160--Hb_001221_330 Hb_007741_130 Hb_007741_130 Hb_005181_160--Hb_007741_130 Hb_004005_020 Hb_004005_020 Hb_005181_160--Hb_004005_020 Hb_000368_030 Hb_000368_030 Hb_005181_160--Hb_000368_030 Hb_005181_160--Hb_002249_070 Hb_004800_100 Hb_004800_100 Hb_075247_010--Hb_004800_100 Hb_000465_270 Hb_000465_270 Hb_075247_010--Hb_000465_270 Hb_004627_030 Hb_004627_030 Hb_075247_010--Hb_004627_030 Hb_075247_010--Hb_012305_130 Hb_000252_100 Hb_000252_100 Hb_075247_010--Hb_000252_100 Hb_000788_060 Hb_000788_060 Hb_075247_010--Hb_000788_060 Hb_000926_100 Hb_000926_100 Hb_000450_160--Hb_000926_100 Hb_006538_190 Hb_006538_190 Hb_000450_160--Hb_006538_190 Hb_004724_450 Hb_004724_450 Hb_000450_160--Hb_004724_450 Hb_001675_030 Hb_001675_030 Hb_000450_160--Hb_001675_030 Hb_000270_740 Hb_000270_740 Hb_000450_160--Hb_000270_740 Hb_083940_010 Hb_083940_010 Hb_001221_330--Hb_083940_010 Hb_022250_020 Hb_022250_020 Hb_001221_330--Hb_022250_020 Hb_000189_170 Hb_000189_170 Hb_001221_330--Hb_000189_170 Hb_002217_100 Hb_002217_100 Hb_001221_330--Hb_002217_100 Hb_004931_110 Hb_004931_110 Hb_001221_330--Hb_004931_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0370515 0.113057 0.371808 0.535583 0.0372519 0.0658012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.171348 0.336736 0.478378 0.356887 0

CAGE analysis