Hb_003464_070

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig3464: 58394-59848
Sequence    

Annotation

kegg
ID rcu:RCOM_0840720
description hypothetical protein
nr
ID XP_012082541.1
description PREDICTED: stress response protein NST1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K2K0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16627 PE=4 SV=1
Gene Ontology
ID GO:0003700
description stress response protein nst1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003464_070 0.0 transcription factor TF Family: Trihelix PREDICTED: stress response protein NST1 [Jatropha curcas]
2 Hb_000038_120 0.1635937678 - - PREDICTED: endoglucanase 9-like [Jatropha curcas]
3 Hb_002685_150 0.1687643177 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
4 Hb_001767_130 0.1808758291 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
5 Hb_001584_260 0.1891072514 - - zinc finger protein, putative [Ricinus communis]
6 Hb_011930_150 0.1898734198 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
7 Hb_002998_070 0.1961603994 - - hypothetical protein CARUB_v10019139mg, partial [Capsella rubella]
8 Hb_000457_210 0.1991692359 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
9 Hb_001008_200 0.2083873331 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC103961552 [Pyrus x bretschneideri]
10 Hb_002217_470 0.2100524663 - - PREDICTED: uncharacterized protein LOC105643559 [Jatropha curcas]
11 Hb_001554_010 0.2135750818 - - PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
12 Hb_007545_120 0.2148395259 - - NADH:cytochrome b5 reductase [Vernicia fordii]
13 Hb_027746_020 0.2152503856 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit B [Jatropha curcas]
14 Hb_002148_020 0.2162015001 - - aldo-keto reductase, putative [Ricinus communis]
15 Hb_012362_030 0.2178667223 - - PREDICTED: GPI-anchored protein LORELEI-like [Populus euphratica]
16 Hb_000913_040 0.2207902169 - - Methyltransferase-related protein, putative [Theobroma cacao]
17 Hb_000953_130 0.2217139974 - - PREDICTED: fructose-bisphosphate aldolase cytoplasmic isozyme [Jatropha curcas]
18 Hb_009193_090 0.2223813599 - - PREDICTED: protein root UVB sensitive 3 isoform X1 [Jatropha curcas]
19 Hb_003001_090 0.2229851583 - - PREDICTED: uncharacterized protein LOC105644365 [Jatropha curcas]
20 Hb_011457_130 0.2232792938 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]

Gene co-expression network

sample Hb_003464_070 Hb_003464_070 Hb_000038_120 Hb_000038_120 Hb_003464_070--Hb_000038_120 Hb_002685_150 Hb_002685_150 Hb_003464_070--Hb_002685_150 Hb_001767_130 Hb_001767_130 Hb_003464_070--Hb_001767_130 Hb_001584_260 Hb_001584_260 Hb_003464_070--Hb_001584_260 Hb_011930_150 Hb_011930_150 Hb_003464_070--Hb_011930_150 Hb_002998_070 Hb_002998_070 Hb_003464_070--Hb_002998_070 Hb_000038_120--Hb_011930_150 Hb_012362_030 Hb_012362_030 Hb_000038_120--Hb_012362_030 Hb_004088_040 Hb_004088_040 Hb_000038_120--Hb_004088_040 Hb_135757_020 Hb_135757_020 Hb_000038_120--Hb_135757_020 Hb_001008_200 Hb_001008_200 Hb_000038_120--Hb_001008_200 Hb_001051_070 Hb_001051_070 Hb_000038_120--Hb_001051_070 Hb_000317_160 Hb_000317_160 Hb_002685_150--Hb_000317_160 Hb_005725_230 Hb_005725_230 Hb_002685_150--Hb_005725_230 Hb_009615_020 Hb_009615_020 Hb_002685_150--Hb_009615_020 Hb_027746_020 Hb_027746_020 Hb_002685_150--Hb_027746_020 Hb_000023_160 Hb_000023_160 Hb_002685_150--Hb_000023_160 Hb_088163_010 Hb_088163_010 Hb_001767_130--Hb_088163_010 Hb_002102_030 Hb_002102_030 Hb_001767_130--Hb_002102_030 Hb_000035_200 Hb_000035_200 Hb_001767_130--Hb_000035_200 Hb_131035_010 Hb_131035_010 Hb_001767_130--Hb_131035_010 Hb_002148_020 Hb_002148_020 Hb_001767_130--Hb_002148_020 Hb_003925_020 Hb_003925_020 Hb_001767_130--Hb_003925_020 Hb_039021_010 Hb_039021_010 Hb_001584_260--Hb_039021_010 Hb_000913_040 Hb_000913_040 Hb_001584_260--Hb_000913_040 Hb_000580_100 Hb_000580_100 Hb_001584_260--Hb_000580_100 Hb_001825_040 Hb_001825_040 Hb_001584_260--Hb_001825_040 Hb_001482_050 Hb_001482_050 Hb_001584_260--Hb_001482_050 Hb_007850_030 Hb_007850_030 Hb_001584_260--Hb_007850_030 Hb_029695_050 Hb_029695_050 Hb_011930_150--Hb_029695_050 Hb_011930_150--Hb_001051_070 Hb_135757_010 Hb_135757_010 Hb_011930_150--Hb_135757_010 Hb_009193_090 Hb_009193_090 Hb_011930_150--Hb_009193_090 Hb_000371_090 Hb_000371_090 Hb_011930_150--Hb_000371_090 Hb_002249_070 Hb_002249_070 Hb_002998_070--Hb_002249_070 Hb_005181_160 Hb_005181_160 Hb_002998_070--Hb_005181_160 Hb_075247_010 Hb_075247_010 Hb_002998_070--Hb_075247_010 Hb_000450_160 Hb_000450_160 Hb_002998_070--Hb_000450_160 Hb_001221_330 Hb_001221_330 Hb_002998_070--Hb_001221_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.03966 5.85445 15.6058 35.4146 3.67325 6.53252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.1107 10.4333 13.0366 21.1569 0.0531677

CAGE analysis