Hb_001762_070

Information

Type -
Description -
Location Contig1762: 57638-63104
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001762_070 0.0 - - -
2 Hb_001385_050 0.1718737861 - - catalytic, putative [Ricinus communis]
3 Hb_022593_060 0.175444455 - - -
4 Hb_010024_010 0.1759357688 - - Ran GTPase binding protein, putative [Ricinus communis]
5 Hb_001206_070 0.1790726293 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000962_010 0.1801925782 - - -
7 Hb_001241_060 0.1948693714 - - -
8 Hb_000116_080 0.2163093469 - - PREDICTED: uncharacterized protein LOC104097358 [Nicotiana tomentosiformis]
9 Hb_001125_020 0.216427798 - - hypothetical protein B456_001G219500 [Gossypium raimondii]
10 Hb_004429_040 0.2184904684 - - -
11 Hb_002540_040 0.2190790373 - - BnaC05g39550D [Brassica napus]
12 Hb_002490_040 0.2223312856 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
13 Hb_005016_070 0.2348288215 - - -
14 Hb_032419_020 0.2381367381 - - PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
15 Hb_012150_050 0.2593427372 - - protein binding protein, putative [Ricinus communis]
16 Hb_144552_010 0.2596339817 - - CC-NBS-LRR protein, putative [Theobroma cacao]
17 Hb_000563_290 0.2612128768 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
18 Hb_000005_210 0.2640745726 - - -
19 Hb_000041_170 0.2640745726 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
20 Hb_000047_040 0.2640745726 - - PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]

Gene co-expression network

sample Hb_001762_070 Hb_001762_070 Hb_001385_050 Hb_001385_050 Hb_001762_070--Hb_001385_050 Hb_022593_060 Hb_022593_060 Hb_001762_070--Hb_022593_060 Hb_010024_010 Hb_010024_010 Hb_001762_070--Hb_010024_010 Hb_001206_070 Hb_001206_070 Hb_001762_070--Hb_001206_070 Hb_000962_010 Hb_000962_010 Hb_001762_070--Hb_000962_010 Hb_001241_060 Hb_001241_060 Hb_001762_070--Hb_001241_060 Hb_001125_020 Hb_001125_020 Hb_001385_050--Hb_001125_020 Hb_001385_050--Hb_001206_070 Hb_001385_050--Hb_022593_060 Hb_001385_050--Hb_010024_010 Hb_000116_080 Hb_000116_080 Hb_001385_050--Hb_000116_080 Hb_001385_050--Hb_001241_060 Hb_022593_060--Hb_010024_010 Hb_022593_060--Hb_001206_070 Hb_022593_060--Hb_001241_060 Hb_022593_060--Hb_000116_080 Hb_004429_040 Hb_004429_040 Hb_022593_060--Hb_004429_040 Hb_010024_010--Hb_001206_070 Hb_010024_010--Hb_001241_060 Hb_010024_010--Hb_004429_040 Hb_010024_010--Hb_000116_080 Hb_001206_070--Hb_000116_080 Hb_001206_070--Hb_001241_060 Hb_001206_070--Hb_001125_020 Hb_000962_010--Hb_001385_050 Hb_000962_010--Hb_001125_020 Hb_000004_140 Hb_000004_140 Hb_000962_010--Hb_000004_140 Hb_000962_010--Hb_001206_070 Hb_000962_010--Hb_022593_060 Hb_001241_060--Hb_004429_040 Hb_002490_040 Hb_002490_040 Hb_001241_060--Hb_002490_040 Hb_000563_290 Hb_000563_290 Hb_001241_060--Hb_000563_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.980867 0.110877 0.423263 0.280909 0 11.7412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis