Hb_000066_180

Information

Type -
Description -
Location Contig66: 280203-280494
Sequence    

Annotation

kegg
ID pop:POPTR_0008s02710g
description hypothetical protein
nr
ID XP_006379482.1
description hypothetical protein POPTR_0008s02710g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5G4N6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s02710g PE=4 SV=1
Gene Ontology
ID GO:0004725
description phosphatidylinositol-3-phosphatase myotubularin-1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52931: 268118-280450
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000066_180 0.0 - - hypothetical protein POPTR_0008s02710g [Populus trichocarpa]
2 Hb_001907_090 0.198334255 - - -
3 Hb_000193_030 0.2110575782 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
4 Hb_000340_330 0.2147586416 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Jatropha curcas]
5 Hb_005318_020 0.2177403559 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]
6 Hb_148658_010 0.2239942688 - - -
7 Hb_094132_010 0.2242565096 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
8 Hb_002450_130 0.2277334715 - - hypothetical protein JCGZ_06565 [Jatropha curcas]
9 Hb_046120_010 0.2294238922 - - -
10 Hb_007083_050 0.2335205956 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Nelumbo nucifera]
11 Hb_004958_040 0.233954187 - - -
12 Hb_122567_020 0.2370193139 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
13 Hb_000084_130 0.237264714 - - -
14 Hb_002023_040 0.2388101568 - - -
15 Hb_103093_010 0.2398322111 - - PREDICTED: wall-associated receptor kinase 4-like [Elaeis guineensis]
16 Hb_021943_070 0.2438935697 - - -
17 Hb_008096_020 0.246419456 - - -
18 Hb_000926_350 0.2473837977 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: upstream activation factor subunit UAF30 [Jatropha curcas]
19 Hb_000082_020 0.2492533813 - - -
20 Hb_106873_020 0.250049068 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]

Gene co-expression network

sample Hb_000066_180 Hb_000066_180 Hb_001907_090 Hb_001907_090 Hb_000066_180--Hb_001907_090 Hb_000193_030 Hb_000193_030 Hb_000066_180--Hb_000193_030 Hb_000340_330 Hb_000340_330 Hb_000066_180--Hb_000340_330 Hb_005318_020 Hb_005318_020 Hb_000066_180--Hb_005318_020 Hb_148658_010 Hb_148658_010 Hb_000066_180--Hb_148658_010 Hb_094132_010 Hb_094132_010 Hb_000066_180--Hb_094132_010 Hb_004958_040 Hb_004958_040 Hb_001907_090--Hb_004958_040 Hb_000684_480 Hb_000684_480 Hb_001907_090--Hb_000684_480 Hb_122567_020 Hb_122567_020 Hb_001907_090--Hb_122567_020 Hb_001385_080 Hb_001385_080 Hb_001907_090--Hb_001385_080 Hb_000084_130 Hb_000084_130 Hb_001907_090--Hb_000084_130 Hb_000193_030--Hb_094132_010 Hb_103093_010 Hb_103093_010 Hb_000193_030--Hb_103093_010 Hb_163132_010 Hb_163132_010 Hb_000193_030--Hb_163132_010 Hb_007356_010 Hb_007356_010 Hb_000193_030--Hb_007356_010 Hb_007290_020 Hb_007290_020 Hb_000193_030--Hb_007290_020 Hb_068804_060 Hb_068804_060 Hb_000193_030--Hb_068804_060 Hb_000340_330--Hb_103093_010 Hb_000130_170 Hb_000130_170 Hb_000340_330--Hb_000130_170 Hb_002450_130 Hb_002450_130 Hb_000340_330--Hb_002450_130 Hb_000683_090 Hb_000683_090 Hb_000340_330--Hb_000683_090 Hb_005723_070 Hb_005723_070 Hb_000340_330--Hb_005723_070 Hb_000340_330--Hb_005318_020 Hb_079978_010 Hb_079978_010 Hb_005318_020--Hb_079978_010 Hb_007083_050 Hb_007083_050 Hb_005318_020--Hb_007083_050 Hb_007447_020 Hb_007447_020 Hb_005318_020--Hb_007447_020 Hb_005318_020--Hb_000683_090 Hb_169170_010 Hb_169170_010 Hb_005318_020--Hb_169170_010 Hb_005318_020--Hb_000084_130 Hb_002078_190 Hb_002078_190 Hb_148658_010--Hb_002078_190 Hb_106873_020 Hb_106873_020 Hb_148658_010--Hb_106873_020 Hb_027287_010 Hb_027287_010 Hb_148658_010--Hb_027287_010 Hb_157968_010 Hb_157968_010 Hb_148658_010--Hb_157968_010 Hb_116367_010 Hb_116367_010 Hb_148658_010--Hb_116367_010 Hb_094132_010--Hb_103093_010 Hb_094132_010--Hb_163132_010 Hb_000671_040 Hb_000671_040 Hb_094132_010--Hb_000671_040 Hb_094132_010--Hb_007356_010 Hb_094132_010--Hb_007290_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.46649 27.0939 2.18091 77.3863 4.76095 205.276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.77979 4.34958 1.53595 16.5169 0

CAGE analysis