Hb_000260_150

Information

Type -
Description -
Location Contig260: 103035-109579
Sequence    

Annotation

kegg
ID pop:POPTR_0344s002001
description hypothetical protein
nr
ID XP_006388092.1
description hypothetical protein POPTR_0344s002001g, partial [Populus trichocarpa]
swissprot
ID P93756
description G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 OS=Arabidopsis thaliana GN=SD31 PE=3 SV=1
trembl
ID U7E1C6
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0344s002001g PE=3 SV=1
Gene Ontology
ID GO:0016301
description probable lrr receptor-like serine threonine-protein kinase at1g06840

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000260_150 0.0 - - hypothetical protein POPTR_0344s002001g, partial [Populus trichocarpa]
2 Hb_006925_090 0.2153992764 - - PREDICTED: protein HAPLESS 2 [Populus euphratica]
3 Hb_001638_010 0.2293425576 - - -
4 Hb_011505_010 0.2588861663 - - -
5 Hb_002257_020 0.2875523142 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
6 Hb_167452_010 0.3028640308 - - hypothetical protein JCGZ_03682 [Jatropha curcas]
7 Hb_114435_010 0.305580779 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_000853_040 0.3134561475 - - conserved hypothetical protein [Ricinus communis]
9 Hb_122873_010 0.3172156262 - - -
10 Hb_104498_030 0.321710058 - - hypothetical protein JCGZ_11092 [Jatropha curcas]
11 Hb_001277_210 0.3236085901 - - -
12 Hb_002608_020 0.3255741239 transcription factor TF Family: MYB PREDICTED: myb-related protein 305 [Jatropha curcas]
13 Hb_002284_110 0.3399380154 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic isoform X2 [Solanum lycopersicum]
14 Hb_000122_240 0.3408730557 - - monovalent cation:proton antiporter, putative [Ricinus communis]
15 Hb_038098_010 0.350528759 - - PREDICTED: uncharacterized protein LOC105793140 [Gossypium raimondii]
16 Hb_021346_040 0.3528947457 - - hypothetical protein JCGZ_26751 [Jatropha curcas]
17 Hb_000599_220 0.3893232828 - - PREDICTED: uncharacterized protein LOC105644022 [Jatropha curcas]
18 Hb_004724_350 0.3976606195 - - conserved hypothetical protein [Ricinus communis]
19 Hb_171062_010 0.3998376752 - - hypothetical protein VITISV_036059 [Vitis vinifera]
20 Hb_000208_030 0.4049254266 - - -

Gene co-expression network

sample Hb_000260_150 Hb_000260_150 Hb_006925_090 Hb_006925_090 Hb_000260_150--Hb_006925_090 Hb_001638_010 Hb_001638_010 Hb_000260_150--Hb_001638_010 Hb_011505_010 Hb_011505_010 Hb_000260_150--Hb_011505_010 Hb_002257_020 Hb_002257_020 Hb_000260_150--Hb_002257_020 Hb_167452_010 Hb_167452_010 Hb_000260_150--Hb_167452_010 Hb_114435_010 Hb_114435_010 Hb_000260_150--Hb_114435_010 Hb_006925_090--Hb_011505_010 Hb_026527_040 Hb_026527_040 Hb_006925_090--Hb_026527_040 Hb_104498_030 Hb_104498_030 Hb_006925_090--Hb_104498_030 Hb_171062_010 Hb_171062_010 Hb_006925_090--Hb_171062_010 Hb_002284_110 Hb_002284_110 Hb_006925_090--Hb_002284_110 Hb_001638_010--Hb_002257_020 Hb_002608_020 Hb_002608_020 Hb_001638_010--Hb_002608_020 Hb_002401_010 Hb_002401_010 Hb_001638_010--Hb_002401_010 Hb_001437_020 Hb_001437_020 Hb_001638_010--Hb_001437_020 Hb_001638_010--Hb_167452_010 Hb_001195_430 Hb_001195_430 Hb_011505_010--Hb_001195_430 Hb_000392_460 Hb_000392_460 Hb_011505_010--Hb_000392_460 Hb_011505_010--Hb_104498_030 Hb_011174_030 Hb_011174_030 Hb_011505_010--Hb_011174_030 Hb_002257_020--Hb_002608_020 Hb_002257_020--Hb_114435_010 Hb_122873_010 Hb_122873_010 Hb_002257_020--Hb_122873_010 Hb_000122_240 Hb_000122_240 Hb_002257_020--Hb_000122_240 Hb_038098_010 Hb_038098_010 Hb_002257_020--Hb_038098_010 Hb_002257_020--Hb_001437_020 Hb_000853_040 Hb_000853_040 Hb_167452_010--Hb_000853_040 Hb_021346_040 Hb_021346_040 Hb_167452_010--Hb_021346_040 Hb_010661_040 Hb_010661_040 Hb_167452_010--Hb_010661_040 Hb_167452_010--Hb_000392_460 Hb_016859_010 Hb_016859_010 Hb_167452_010--Hb_016859_010 Hb_114435_010--Hb_122873_010 Hb_114435_010--Hb_038098_010 Hb_114435_010--Hb_000122_240 Hb_114435_010--Hb_002608_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.018794 0.00890687 0 0 0.00995967
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.020353 0 0 0

CAGE analysis