Hb_000122_240

Information

Type -
Description -
Location Contig122: 196692-201426
Sequence    

Annotation

kegg
ID rcu:RCOM_0687540
description monovalent cation:proton antiporter, putative
nr
ID XP_002520795.1
description monovalent cation:proton antiporter, putative [Ricinus communis]
swissprot
ID Q9SIT5
description Cation/H(+) antiporter 15 OS=Arabidopsis thaliana GN=CHX15 PE=2 SV=1
trembl
ID B9S476
description Monovalent cation:proton antiporter, putative OS=Ricinus communis GN=RCOM_0687540 PE=4 SV=1
Gene Ontology
ID GO:0016021
description k(+) h(+)

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000122_240 0.0 - - monovalent cation:proton antiporter, putative [Ricinus communis]
2 Hb_002608_020 0.1467304112 transcription factor TF Family: MYB PREDICTED: myb-related protein 305 [Jatropha curcas]
3 Hb_114435_010 0.1719513788 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
4 Hb_002257_020 0.2076965743 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
5 Hb_122873_010 0.2989031125 - - -
6 Hb_038098_010 0.307988376 - - PREDICTED: uncharacterized protein LOC105793140 [Gossypium raimondii]
7 Hb_001437_020 0.3203076074 - - PREDICTED: uncharacterized protein LOC105628060 isoform X2 [Jatropha curcas]
8 Hb_000260_150 0.3408730557 - - hypothetical protein POPTR_0344s002001g, partial [Populus trichocarpa]
9 Hb_002046_030 0.3663656259 - - PREDICTED: uncharacterized protein LOC104788746 [Camelina sativa]
10 Hb_002284_110 0.3763482429 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic isoform X2 [Solanum lycopersicum]
11 Hb_000032_530 0.3909633923 - - -
12 Hb_001638_010 0.3913247411 - - -
13 Hb_078466_020 0.3952913484 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
14 Hb_002871_200 0.3958005625 - - -
15 Hb_003581_040 0.3958522186 - - hypothetical protein PHAVU_002G080900g [Phaseolus vulgaris]
16 Hb_022348_020 0.3959612391 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_080147_010 0.3966726124 - - -
18 Hb_006183_010 0.3967616323 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_012733_080 0.3968257712 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_000078_040 0.3974018983 - - PREDICTED: uncharacterized protein LOC104907366 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_000122_240 Hb_000122_240 Hb_002608_020 Hb_002608_020 Hb_000122_240--Hb_002608_020 Hb_114435_010 Hb_114435_010 Hb_000122_240--Hb_114435_010 Hb_002257_020 Hb_002257_020 Hb_000122_240--Hb_002257_020 Hb_122873_010 Hb_122873_010 Hb_000122_240--Hb_122873_010 Hb_038098_010 Hb_038098_010 Hb_000122_240--Hb_038098_010 Hb_001437_020 Hb_001437_020 Hb_000122_240--Hb_001437_020 Hb_002608_020--Hb_002257_020 Hb_002608_020--Hb_001437_020 Hb_002608_020--Hb_114435_010 Hb_001638_010 Hb_001638_010 Hb_002608_020--Hb_001638_010 Hb_002608_020--Hb_122873_010 Hb_114435_010--Hb_122873_010 Hb_114435_010--Hb_038098_010 Hb_114435_010--Hb_002257_020 Hb_000260_150 Hb_000260_150 Hb_114435_010--Hb_000260_150 Hb_002257_020--Hb_122873_010 Hb_002257_020--Hb_038098_010 Hb_002257_020--Hb_001437_020 Hb_122873_010--Hb_038098_010 Hb_049415_010 Hb_049415_010 Hb_122873_010--Hb_049415_010 Hb_005520_020 Hb_005520_020 Hb_122873_010--Hb_005520_020 Hb_116293_020 Hb_116293_020 Hb_122873_010--Hb_116293_020 Hb_004724_350 Hb_004724_350 Hb_038098_010--Hb_004724_350 Hb_012725_010 Hb_012725_010 Hb_038098_010--Hb_012725_010 Hb_000960_070 Hb_000960_070 Hb_001437_020--Hb_000960_070 Hb_126907_010 Hb_126907_010 Hb_001437_020--Hb_126907_010 Hb_084611_010 Hb_084611_010 Hb_001437_020--Hb_084611_010 Hb_000014_140 Hb_000014_140 Hb_001437_020--Hb_000014_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0146914 0 0 0 0.0194608
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0132529 0 0 0

CAGE analysis