Hb_049415_010

Information

Type -
Description -
Location Contig49415: 4818-5372
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_049415_010 0.0 - - -
2 Hb_005520_020 0.0340697042 - - hypothetical protein EUGRSUZ_G03336 [Eucalyptus grandis]
3 Hb_116293_020 0.0351895861 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
4 Hb_009449_010 0.0807934185 - - Serine/threonine-protein kinase HT1 [Gossypium arboreum]
5 Hb_012725_010 0.0966232357 - - -
6 Hb_016859_010 0.1786966905 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_187136_010 0.229689593 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
8 Hb_122873_010 0.274415151 - - -
9 Hb_098988_010 0.2781167096 - - hypothetical protein JCGZ_18539 [Jatropha curcas]
10 Hb_004724_350 0.2920690421 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000152_310 0.301589547 - - -
12 Hb_001268_100 0.3240880859 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
13 Hb_038098_010 0.3313148624 - - PREDICTED: uncharacterized protein LOC105793140 [Gossypium raimondii]
14 Hb_167452_010 0.3366113517 - - hypothetical protein JCGZ_03682 [Jatropha curcas]
15 Hb_002311_170 0.3462432449 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Eucalyptus grandis]
16 Hb_107500_010 0.3470529341 - - -
17 Hb_009813_080 0.3531910487 - - hypothetical protein CISIN_1g045991mg [Citrus sinensis]
18 Hb_003158_020 0.3540739775 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
19 Hb_001401_100 0.3559474154 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
20 Hb_054865_080 0.3562568237 - - PREDICTED: uncharacterized protein LOC105642789 [Jatropha curcas]

Gene co-expression network

sample Hb_049415_010 Hb_049415_010 Hb_005520_020 Hb_005520_020 Hb_049415_010--Hb_005520_020 Hb_116293_020 Hb_116293_020 Hb_049415_010--Hb_116293_020 Hb_009449_010 Hb_009449_010 Hb_049415_010--Hb_009449_010 Hb_012725_010 Hb_012725_010 Hb_049415_010--Hb_012725_010 Hb_016859_010 Hb_016859_010 Hb_049415_010--Hb_016859_010 Hb_187136_010 Hb_187136_010 Hb_049415_010--Hb_187136_010 Hb_005520_020--Hb_116293_020 Hb_005520_020--Hb_009449_010 Hb_005520_020--Hb_012725_010 Hb_005520_020--Hb_016859_010 Hb_005520_020--Hb_187136_010 Hb_116293_020--Hb_009449_010 Hb_116293_020--Hb_012725_010 Hb_116293_020--Hb_016859_010 Hb_116293_020--Hb_187136_010 Hb_009449_010--Hb_016859_010 Hb_009449_010--Hb_187136_010 Hb_009449_010--Hb_012725_010 Hb_004724_350 Hb_004724_350 Hb_012725_010--Hb_004724_350 Hb_012725_010--Hb_016859_010 Hb_016859_010--Hb_187136_010 Hb_098988_010 Hb_098988_010 Hb_016859_010--Hb_098988_010 Hb_187136_010--Hb_098988_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0576277 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.123194 0 0 0

CAGE analysis