Hb_004724_350

Information

Type -
Description -
Location Contig4724: 221571-222372
Sequence    

Annotation

kegg
ID rcu:RCOM_1282030
description hypothetical protein
nr
ID XP_002523839.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID B9SCX0
description Casparian strip membrane protein 3 OS=Ricinus communis GN=RCOM_1282030 PE=3 SV=1
trembl
ID A0A067KXZ9
description CASP-like protein OS=Jatropha curcas GN=JCGZ_04188 PE=3 SV=1
Gene Ontology
ID GO:0005886
description casparian strip protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44380: 216373-220662
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004724_350 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012725_010 0.268816131 - - -
3 Hb_122873_010 0.285054653 - - -
4 Hb_107500_010 0.2863220345 - - -
5 Hb_001268_100 0.2902203871 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
6 Hb_038098_010 0.2920170468 - - PREDICTED: uncharacterized protein LOC105793140 [Gossypium raimondii]
7 Hb_049415_010 0.2920690421 - - -
8 Hb_001277_080 0.3052968947 - - PREDICTED: vegetative cell wall protein gp1 [Jatropha curcas]
9 Hb_005520_020 0.3064512861 - - hypothetical protein EUGRSUZ_G03336 [Eucalyptus grandis]
10 Hb_116293_020 0.3069696617 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
11 Hb_000853_380 0.3149131892 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005048_060 0.3258555964 - - conserved hypothetical protein [Ricinus communis]
13 Hb_009449_010 0.3302476949 - - Serine/threonine-protein kinase HT1 [Gossypium arboreum]
14 Hb_004414_040 0.3384196965 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
15 Hb_002391_330 0.347290152 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005772_010 0.3544434191 - - PREDICTED: abscisic acid receptor PYL4 [Jatropha curcas]
17 Hb_003579_020 0.3567117674 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
18 Hb_003158_020 0.3574452841 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
19 Hb_011609_110 0.3598865364 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
20 Hb_002908_070 0.3606370651 - - DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_004724_350 Hb_004724_350 Hb_012725_010 Hb_012725_010 Hb_004724_350--Hb_012725_010 Hb_122873_010 Hb_122873_010 Hb_004724_350--Hb_122873_010 Hb_107500_010 Hb_107500_010 Hb_004724_350--Hb_107500_010 Hb_001268_100 Hb_001268_100 Hb_004724_350--Hb_001268_100 Hb_038098_010 Hb_038098_010 Hb_004724_350--Hb_038098_010 Hb_049415_010 Hb_049415_010 Hb_004724_350--Hb_049415_010 Hb_012725_010--Hb_049415_010 Hb_005520_020 Hb_005520_020 Hb_012725_010--Hb_005520_020 Hb_116293_020 Hb_116293_020 Hb_012725_010--Hb_116293_020 Hb_009449_010 Hb_009449_010 Hb_012725_010--Hb_009449_010 Hb_016859_010 Hb_016859_010 Hb_012725_010--Hb_016859_010 Hb_122873_010--Hb_038098_010 Hb_114435_010 Hb_114435_010 Hb_122873_010--Hb_114435_010 Hb_002257_020 Hb_002257_020 Hb_122873_010--Hb_002257_020 Hb_122873_010--Hb_049415_010 Hb_122873_010--Hb_005520_020 Hb_122873_010--Hb_116293_020 Hb_107500_010--Hb_001268_100 Hb_000853_380 Hb_000853_380 Hb_107500_010--Hb_000853_380 Hb_000457_040 Hb_000457_040 Hb_107500_010--Hb_000457_040 Hb_134310_030 Hb_134310_030 Hb_107500_010--Hb_134310_030 Hb_002016_160 Hb_002016_160 Hb_107500_010--Hb_002016_160 Hb_001268_100--Hb_134310_030 Hb_001268_100--Hb_122873_010 Hb_001268_100--Hb_002257_020 Hb_001268_100--Hb_000853_380 Hb_038098_010--Hb_114435_010 Hb_038098_010--Hb_002257_020 Hb_000122_240 Hb_000122_240 Hb_038098_010--Hb_000122_240 Hb_038098_010--Hb_012725_010 Hb_049415_010--Hb_005520_020 Hb_049415_010--Hb_116293_020 Hb_049415_010--Hb_009449_010 Hb_049415_010--Hb_016859_010 Hb_187136_010 Hb_187136_010 Hb_049415_010--Hb_187136_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.225903 0.914732 0.155095 0 0.0410735 0.225561
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0946384 3.79359 0 0 0

CAGE analysis