Hb_107500_010

Information

Type -
Description -
Location Contig107500: 8222-9485
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_107500_010 0.0 - - -
2 Hb_001268_100 0.1137710846 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
3 Hb_000853_380 0.2261002043 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000457_040 0.2510046801 - - -
5 Hb_004724_350 0.2863220345 - - conserved hypothetical protein [Ricinus communis]
6 Hb_134310_030 0.2956118953 - - hypothetical protein JCGZ_10790 [Jatropha curcas]
7 Hb_002016_160 0.3160375091 - - -
8 Hb_005048_060 0.3264734435 - - conserved hypothetical protein [Ricinus communis]
9 Hb_116293_020 0.3446792458 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
10 Hb_005520_020 0.3447064092 - - hypothetical protein EUGRSUZ_G03336 [Eucalyptus grandis]
11 Hb_009449_010 0.3462868788 - - Serine/threonine-protein kinase HT1 [Gossypium arboreum]
12 Hb_049415_010 0.3470529341 - - -
13 Hb_000787_040 0.3479443951 - - PREDICTED: uncharacterized protein LOC105115900 isoform X1 [Populus euphratica]
14 Hb_122873_010 0.3543802129 - - -
15 Hb_005524_010 0.3556493909 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
16 Hb_002823_020 0.3582273276 - - -
17 Hb_004088_060 0.3626521586 - - hypothetical protein POPTR_0012s01875g [Populus trichocarpa]
18 Hb_002014_110 0.3647151438 - - -
19 Hb_002185_010 0.3665138955 - - PREDICTED: uncharacterized protein LOC105795658 [Gossypium raimondii]
20 Hb_016859_010 0.3670074088 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_107500_010 Hb_107500_010 Hb_001268_100 Hb_001268_100 Hb_107500_010--Hb_001268_100 Hb_000853_380 Hb_000853_380 Hb_107500_010--Hb_000853_380 Hb_000457_040 Hb_000457_040 Hb_107500_010--Hb_000457_040 Hb_004724_350 Hb_004724_350 Hb_107500_010--Hb_004724_350 Hb_134310_030 Hb_134310_030 Hb_107500_010--Hb_134310_030 Hb_002016_160 Hb_002016_160 Hb_107500_010--Hb_002016_160 Hb_001268_100--Hb_134310_030 Hb_122873_010 Hb_122873_010 Hb_001268_100--Hb_122873_010 Hb_001268_100--Hb_004724_350 Hb_002257_020 Hb_002257_020 Hb_001268_100--Hb_002257_020 Hb_001268_100--Hb_000853_380 Hb_000853_380--Hb_000457_040 Hb_001798_040 Hb_001798_040 Hb_000853_380--Hb_001798_040 Hb_000853_380--Hb_004724_350 Hb_005524_010 Hb_005524_010 Hb_000853_380--Hb_005524_010 Hb_002185_010 Hb_002185_010 Hb_000457_040--Hb_002185_010 Hb_000457_040--Hb_001268_100 Hb_000326_020 Hb_000326_020 Hb_000457_040--Hb_000326_020 Hb_032533_010 Hb_032533_010 Hb_000457_040--Hb_032533_010 Hb_012725_010 Hb_012725_010 Hb_004724_350--Hb_012725_010 Hb_004724_350--Hb_122873_010 Hb_038098_010 Hb_038098_010 Hb_004724_350--Hb_038098_010 Hb_049415_010 Hb_049415_010 Hb_004724_350--Hb_049415_010 Hb_000482_060 Hb_000482_060 Hb_134310_030--Hb_000482_060 Hb_027428_030 Hb_027428_030 Hb_134310_030--Hb_027428_030 Hb_000173_480 Hb_000173_480 Hb_134310_030--Hb_000173_480 Hb_000627_100 Hb_000627_100 Hb_134310_030--Hb_000627_100 Hb_008195_040 Hb_008195_040 Hb_002016_160--Hb_008195_040 Hb_098988_010 Hb_098988_010 Hb_002016_160--Hb_098988_010 Hb_187136_010 Hb_187136_010 Hb_002016_160--Hb_187136_010 Hb_016859_010 Hb_016859_010 Hb_002016_160--Hb_016859_010 Hb_002016_160--Hb_001268_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.14325 0.344162 0 0 0.0815891 0.036079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.590957 0 0 0

CAGE analysis