Hb_008195_040

Information

Type -
Description -
Location Contig8195: 43437-50996
Sequence    

Annotation

kegg
ID tcc:TCM_031224
description hypothetical protein
nr
ID CAN79644.1
description hypothetical protein VITISV_033788 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5C3Q8
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033788 PE=4 SV=1
Gene Ontology
ID GO:0000166
description retrotransposon unclassified

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008195_040 0.0 - - hypothetical protein VITISV_033788 [Vitis vinifera]
2 Hb_002016_160 0.2405663504 - - -
3 Hb_000625_110 0.2590510218 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
4 Hb_005725_190 0.2873505569 - - hypothetical protein JCGZ_15992 [Jatropha curcas]
5 Hb_006857_030 0.2880726612 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_002417_030 0.2897800463 - - PREDICTED: purine permease 3-like [Jatropha curcas]
7 Hb_002401_010 0.2922664362 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
8 Hb_002211_040 0.2939235314 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
9 Hb_003100_010 0.2957645375 - - PREDICTED: uncharacterized protein LOC101217345 [Cucumis sativus]
10 Hb_017647_020 0.2986864727 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
11 Hb_022137_040 0.2993421943 - - PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]
12 Hb_002063_030 0.3048920428 - - -
13 Hb_011689_140 0.3066983291 - - PREDICTED: probable prolyl 4-hydroxylase 4 [Jatropha curcas]
14 Hb_007166_030 0.3095044306 - - -
15 Hb_000608_210 0.3194955698 - - PREDICTED: leucine-rich repeat receptor-like protein FASCIATED EAR2 [Gossypium raimondii]
16 Hb_006198_170 0.322701058 - - PREDICTED: serine/threonine-protein kinase At3g07070-like [Jatropha curcas]
17 Hb_031862_260 0.3234006001 - - conserved hypothetical protein [Ricinus communis]
18 Hb_098988_010 0.324015551 - - hypothetical protein JCGZ_18539 [Jatropha curcas]
19 Hb_008695_030 0.3280047646 - - hypothetical protein JCGZ_12043 [Jatropha curcas]
20 Hb_020248_010 0.3301910608 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008195_040 Hb_008195_040 Hb_002016_160 Hb_002016_160 Hb_008195_040--Hb_002016_160 Hb_000625_110 Hb_000625_110 Hb_008195_040--Hb_000625_110 Hb_005725_190 Hb_005725_190 Hb_008195_040--Hb_005725_190 Hb_006857_030 Hb_006857_030 Hb_008195_040--Hb_006857_030 Hb_002417_030 Hb_002417_030 Hb_008195_040--Hb_002417_030 Hb_002401_010 Hb_002401_010 Hb_008195_040--Hb_002401_010 Hb_098988_010 Hb_098988_010 Hb_002016_160--Hb_098988_010 Hb_187136_010 Hb_187136_010 Hb_002016_160--Hb_187136_010 Hb_016859_010 Hb_016859_010 Hb_002016_160--Hb_016859_010 Hb_107500_010 Hb_107500_010 Hb_002016_160--Hb_107500_010 Hb_001268_100 Hb_001268_100 Hb_002016_160--Hb_001268_100 Hb_000625_110--Hb_002417_030 Hb_038758_010 Hb_038758_010 Hb_000625_110--Hb_038758_010 Hb_000142_020 Hb_000142_020 Hb_000625_110--Hb_000142_020 Hb_003100_010 Hb_003100_010 Hb_000625_110--Hb_003100_010 Hb_006198_170 Hb_006198_170 Hb_000625_110--Hb_006198_170 Hb_011689_140 Hb_011689_140 Hb_000625_110--Hb_011689_140 Hb_000275_070 Hb_000275_070 Hb_005725_190--Hb_000275_070 Hb_000574_120 Hb_000574_120 Hb_005725_190--Hb_000574_120 Hb_002760_060 Hb_002760_060 Hb_005725_190--Hb_002760_060 Hb_003442_050 Hb_003442_050 Hb_005725_190--Hb_003442_050 Hb_013057_030 Hb_013057_030 Hb_005725_190--Hb_013057_030 Hb_002301_200 Hb_002301_200 Hb_005725_190--Hb_002301_200 Hb_006857_030--Hb_000625_110 Hb_002211_040 Hb_002211_040 Hb_006857_030--Hb_002211_040 Hb_079576_010 Hb_079576_010 Hb_006857_030--Hb_079576_010 Hb_007441_060 Hb_007441_060 Hb_006857_030--Hb_007441_060 Hb_001863_150 Hb_001863_150 Hb_006857_030--Hb_001863_150 Hb_012055_100 Hb_012055_100 Hb_002417_030--Hb_012055_100 Hb_002417_030--Hb_006198_170 Hb_002417_030--Hb_038758_010 Hb_000877_090 Hb_000877_090 Hb_002417_030--Hb_000877_090 Hb_002417_030--Hb_000142_020 Hb_002401_010--Hb_002211_040 Hb_002401_010--Hb_002301_200 Hb_143629_030 Hb_143629_030 Hb_002401_010--Hb_143629_030 Hb_002401_010--Hb_005725_190 Hb_000111_300 Hb_000111_300 Hb_002401_010--Hb_000111_300 Hb_001902_150 Hb_001902_150 Hb_002401_010--Hb_001902_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00512361 0.0387623 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00913588 0 0.00361955 0

CAGE analysis