Hb_006857_030

Information

Type -
Description -
Location Contig6857: 30751-35246
Sequence    

Annotation

kegg
ID tcc:TCM_009998
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044383.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID A4FUB7
description Gypsy retrotransposon integrase-like protein 1 OS=Bos taurus GN=GIN1 PE=2 SV=1
trembl
ID A0A061E5E3
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009998 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006857_030 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_000625_110 0.2693590638 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
3 Hb_008195_040 0.2880726612 - - hypothetical protein VITISV_033788 [Vitis vinifera]
4 Hb_002211_040 0.2892788797 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
5 Hb_079576_010 0.2902797945 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Fragaria vesca subsp. vesca]
6 Hb_007441_060 0.2913554443 - - -
7 Hb_001863_150 0.2919785504 - - VQ motif-containing family protein [Populus trichocarpa]
8 Hb_001486_150 0.2951823397 - - -
9 Hb_002417_030 0.2962471358 - - PREDICTED: purine permease 3-like [Jatropha curcas]
10 Hb_020248_010 0.2982110112 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
11 Hb_000567_080 0.3007719937 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
12 Hb_004724_130 0.3033883557 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14 [Jatropha curcas]
13 Hb_000160_240 0.3060526667 - - PREDICTED: uncharacterized protein At1g66480 [Jatropha curcas]
14 Hb_003504_040 0.311358162 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
15 Hb_000270_350 0.3114327462 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
16 Hb_000486_070 0.312559268 - - hypothetical protein JCGZ_25069 [Jatropha curcas]
17 Hb_005147_040 0.3143167276 - - PREDICTED: uncharacterized protein LOC105629674 [Jatropha curcas]
18 Hb_005400_040 0.3179666132 - - PREDICTED: uncharacterized protein At4g04775-like [Jatropha curcas]
19 Hb_000111_300 0.3207452095 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
20 Hb_000002_060 0.3214751598 - - BnaA03g50800D [Brassica napus]

Gene co-expression network

sample Hb_006857_030 Hb_006857_030 Hb_000625_110 Hb_000625_110 Hb_006857_030--Hb_000625_110 Hb_008195_040 Hb_008195_040 Hb_006857_030--Hb_008195_040 Hb_002211_040 Hb_002211_040 Hb_006857_030--Hb_002211_040 Hb_079576_010 Hb_079576_010 Hb_006857_030--Hb_079576_010 Hb_007441_060 Hb_007441_060 Hb_006857_030--Hb_007441_060 Hb_001863_150 Hb_001863_150 Hb_006857_030--Hb_001863_150 Hb_002417_030 Hb_002417_030 Hb_000625_110--Hb_002417_030 Hb_038758_010 Hb_038758_010 Hb_000625_110--Hb_038758_010 Hb_000142_020 Hb_000142_020 Hb_000625_110--Hb_000142_020 Hb_003100_010 Hb_003100_010 Hb_000625_110--Hb_003100_010 Hb_006198_170 Hb_006198_170 Hb_000625_110--Hb_006198_170 Hb_011689_140 Hb_011689_140 Hb_000625_110--Hb_011689_140 Hb_002016_160 Hb_002016_160 Hb_008195_040--Hb_002016_160 Hb_008195_040--Hb_000625_110 Hb_005725_190 Hb_005725_190 Hb_008195_040--Hb_005725_190 Hb_008195_040--Hb_002417_030 Hb_002401_010 Hb_002401_010 Hb_008195_040--Hb_002401_010 Hb_002211_040--Hb_002401_010 Hb_143629_030 Hb_143629_030 Hb_002211_040--Hb_143629_030 Hb_002301_200 Hb_002301_200 Hb_002211_040--Hb_002301_200 Hb_000111_300 Hb_000111_300 Hb_002211_040--Hb_000111_300 Hb_000275_070 Hb_000275_070 Hb_002211_040--Hb_000275_070 Hb_002211_040--Hb_005725_190 Hb_068492_010 Hb_068492_010 Hb_079576_010--Hb_068492_010 Hb_003142_090 Hb_003142_090 Hb_079576_010--Hb_003142_090 Hb_002375_050 Hb_002375_050 Hb_079576_010--Hb_002375_050 Hb_001366_130 Hb_001366_130 Hb_079576_010--Hb_001366_130 Hb_000421_020 Hb_000421_020 Hb_079576_010--Hb_000421_020 Hb_001140_320 Hb_001140_320 Hb_079576_010--Hb_001140_320 Hb_007773_030 Hb_007773_030 Hb_007441_060--Hb_007773_030 Hb_007885_080 Hb_007885_080 Hb_007441_060--Hb_007885_080 Hb_000270_850 Hb_000270_850 Hb_007441_060--Hb_000270_850 Hb_133636_010 Hb_133636_010 Hb_007441_060--Hb_133636_010 Hb_001377_500 Hb_001377_500 Hb_007441_060--Hb_001377_500 Hb_000676_030 Hb_000676_030 Hb_007441_060--Hb_000676_030 Hb_002235_240 Hb_002235_240 Hb_001863_150--Hb_002235_240 Hb_001141_360 Hb_001141_360 Hb_001863_150--Hb_001141_360 Hb_005400_040 Hb_005400_040 Hb_001863_150--Hb_005400_040 Hb_004724_130 Hb_004724_130 Hb_001863_150--Hb_004724_130 Hb_042175_010 Hb_042175_010 Hb_001863_150--Hb_042175_010 Hb_009838_060 Hb_009838_060 Hb_001863_150--Hb_009838_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0179284 0.0720104 0.00862607 0.0040996 0 0.00483653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0197599 0 0.0195787 0

CAGE analysis