Hb_003100_010

Information

Type -
Description -
Location Contig3100: 6891-18582
Sequence    

Annotation

kegg
ID cic:CICLE_v10014011mg
description hypothetical protein
nr
ID XP_004138566.2
description PREDICTED: uncharacterized protein LOC101217345 [Cucumis sativus]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A067L8T1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01297 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003100_010 0.0 - - PREDICTED: uncharacterized protein LOC101217345 [Cucumis sativus]
2 Hb_000142_020 0.2011045573 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
3 Hb_000625_110 0.2054486773 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
4 Hb_038758_010 0.2303411736 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
5 Hb_008695_030 0.2507234361 - - hypothetical protein JCGZ_12043 [Jatropha curcas]
6 Hb_008453_070 0.2600838143 - - putative aquaporin [Vitis vinifera]
7 Hb_002063_030 0.2690803104 - - -
8 Hb_000160_240 0.2708786881 - - PREDICTED: uncharacterized protein At1g66480 [Jatropha curcas]
9 Hb_000482_060 0.2738725563 transcription factor TF Family: LOB hypothetical protein JCGZ_07664 [Jatropha curcas]
10 Hb_000186_210 0.2824099116 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
11 Hb_002217_440 0.2843295864 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
12 Hb_007218_140 0.2869677001 - - hypothetical protein JCGZ_24847 [Jatropha curcas]
13 Hb_002417_030 0.2882817351 - - PREDICTED: purine permease 3-like [Jatropha curcas]
14 Hb_000638_210 0.2914630997 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
15 Hb_022137_040 0.2926353065 - - PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]
16 Hb_002411_140 0.2944973461 - - PREDICTED: cytosolic sulfotransferase 15-like [Jatropha curcas]
17 Hb_008195_040 0.2957645375 - - hypothetical protein VITISV_033788 [Vitis vinifera]
18 Hb_003504_040 0.3000591879 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 2-like [Jatropha curcas]
19 Hb_002774_090 0.3016072067 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007105_010 0.301677763 - - PREDICTED: uncharacterized protein LOC103455579 [Malus domestica]

Gene co-expression network

sample Hb_003100_010 Hb_003100_010 Hb_000142_020 Hb_000142_020 Hb_003100_010--Hb_000142_020 Hb_000625_110 Hb_000625_110 Hb_003100_010--Hb_000625_110 Hb_038758_010 Hb_038758_010 Hb_003100_010--Hb_038758_010 Hb_008695_030 Hb_008695_030 Hb_003100_010--Hb_008695_030 Hb_008453_070 Hb_008453_070 Hb_003100_010--Hb_008453_070 Hb_002063_030 Hb_002063_030 Hb_003100_010--Hb_002063_030 Hb_000142_020--Hb_038758_010 Hb_002217_440 Hb_002217_440 Hb_000142_020--Hb_002217_440 Hb_000877_090 Hb_000877_090 Hb_000142_020--Hb_000877_090 Hb_004488_010 Hb_004488_010 Hb_000142_020--Hb_004488_010 Hb_000142_020--Hb_000625_110 Hb_001810_010 Hb_001810_010 Hb_000142_020--Hb_001810_010 Hb_002417_030 Hb_002417_030 Hb_000625_110--Hb_002417_030 Hb_000625_110--Hb_038758_010 Hb_006198_170 Hb_006198_170 Hb_000625_110--Hb_006198_170 Hb_011689_140 Hb_011689_140 Hb_000625_110--Hb_011689_140 Hb_038758_010--Hb_000877_090 Hb_038758_010--Hb_002217_440 Hb_038758_010--Hb_001810_010 Hb_012055_100 Hb_012055_100 Hb_038758_010--Hb_012055_100 Hb_008695_030--Hb_002063_030 Hb_015978_030 Hb_015978_030 Hb_008695_030--Hb_015978_030 Hb_001514_040 Hb_001514_040 Hb_008695_030--Hb_001514_040 Hb_054886_010 Hb_054886_010 Hb_008695_030--Hb_054886_010 Hb_179860_010 Hb_179860_010 Hb_008695_030--Hb_179860_010 Hb_000014_140 Hb_000014_140 Hb_008453_070--Hb_000014_140 Hb_001922_160 Hb_001922_160 Hb_008453_070--Hb_001922_160 Hb_002411_140 Hb_002411_140 Hb_008453_070--Hb_002411_140 Hb_008453_070--Hb_001514_040 Hb_001250_110 Hb_001250_110 Hb_008453_070--Hb_001250_110 Hb_001565_120 Hb_001565_120 Hb_008453_070--Hb_001565_120 Hb_001902_150 Hb_001902_150 Hb_002063_030--Hb_001902_150 Hb_001189_060 Hb_001189_060 Hb_002063_030--Hb_001189_060 Hb_007218_140 Hb_007218_140 Hb_002063_030--Hb_007218_140 Hb_017647_020 Hb_017647_020 Hb_002063_030--Hb_017647_020 Hb_000275_070 Hb_000275_070 Hb_002063_030--Hb_000275_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.118598 2.34495 0.00227975 0.00834288 0.0885846 0.0628439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.279509 0.395959 0 0.495903 0.035518

CAGE analysis