Hb_179860_010

Information

Type -
Description -
Location Contig179860: 336-602
Sequence    

Annotation

kegg
ID rcu:RCOM_0517290
description hypothetical protein
nr
ID XP_002528756.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SRY7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0517290 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_179860_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005000_230 0.1719669224 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]
3 Hb_002864_040 0.1949214573 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
4 Hb_045414_010 0.1974524152 - - unnamed protein product [Vitis vinifera]
5 Hb_000155_100 0.2017970317 - - Protein MLO, putative [Ricinus communis]
6 Hb_000645_100 0.2033344295 - - enzyme inhibitor, putative [Ricinus communis]
7 Hb_005643_020 0.2079036814 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
8 Hb_007850_050 0.2082137064 - - flavonoid 3-hydroxylase, putative [Ricinus communis]
9 Hb_015473_020 0.2096117588 - - hypothetical protein B456_001G090400 [Gossypium raimondii]
10 Hb_000501_180 0.2124106595 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 [Jatropha curcas]
11 Hb_005648_030 0.212483044 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH18-like [Jatropha curcas]
12 Hb_000522_020 0.2133082108 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
13 Hb_005588_010 0.214980441 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
14 Hb_001405_260 0.2161989862 - - E3 ubiquitin ligase PUB14, putative [Ricinus communis]
15 Hb_001511_130 0.2165743307 - - PREDICTED: taxadien-5-alpha-ol O-acetyltransferase [Jatropha curcas]
16 Hb_039650_010 0.2211176566 - - cellulose synthase-like protein [Populus tomentosa]
17 Hb_000563_380 0.2220536271 - - hypothetical protein CICLE_v10007206mg [Citrus clementina]
18 Hb_000164_180 0.2237690053 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
19 Hb_033153_010 0.2243756938 - - PREDICTED: MLO-like protein 12 [Jatropha curcas]
20 Hb_000846_020 0.22492018 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_179860_010 Hb_179860_010 Hb_005000_230 Hb_005000_230 Hb_179860_010--Hb_005000_230 Hb_002864_040 Hb_002864_040 Hb_179860_010--Hb_002864_040 Hb_045414_010 Hb_045414_010 Hb_179860_010--Hb_045414_010 Hb_000155_100 Hb_000155_100 Hb_179860_010--Hb_000155_100 Hb_000645_100 Hb_000645_100 Hb_179860_010--Hb_000645_100 Hb_005643_020 Hb_005643_020 Hb_179860_010--Hb_005643_020 Hb_039650_010 Hb_039650_010 Hb_005000_230--Hb_039650_010 Hb_008707_020 Hb_008707_020 Hb_005000_230--Hb_008707_020 Hb_011924_030 Hb_011924_030 Hb_005000_230--Hb_011924_030 Hb_000284_060 Hb_000284_060 Hb_005000_230--Hb_000284_060 Hb_001403_070 Hb_001403_070 Hb_005000_230--Hb_001403_070 Hb_007850_050 Hb_007850_050 Hb_005000_230--Hb_007850_050 Hb_002864_040--Hb_007850_050 Hb_000876_060 Hb_000876_060 Hb_002864_040--Hb_000876_060 Hb_004096_040 Hb_004096_040 Hb_002864_040--Hb_004096_040 Hb_015473_020 Hb_015473_020 Hb_002864_040--Hb_015473_020 Hb_000215_120 Hb_000215_120 Hb_002864_040--Hb_000215_120 Hb_000846_020 Hb_000846_020 Hb_002864_040--Hb_000846_020 Hb_000563_380 Hb_000563_380 Hb_045414_010--Hb_000563_380 Hb_091913_010 Hb_091913_010 Hb_045414_010--Hb_091913_010 Hb_008897_020 Hb_008897_020 Hb_045414_010--Hb_008897_020 Hb_045414_010--Hb_005643_020 Hb_005588_010 Hb_005588_010 Hb_045414_010--Hb_005588_010 Hb_045414_010--Hb_002864_040 Hb_000155_100--Hb_000645_100 Hb_006124_040 Hb_006124_040 Hb_000155_100--Hb_006124_040 Hb_000155_100--Hb_005000_230 Hb_030312_060 Hb_030312_060 Hb_000155_100--Hb_030312_060 Hb_006452_140 Hb_006452_140 Hb_000155_100--Hb_006452_140 Hb_030469_010 Hb_030469_010 Hb_000645_100--Hb_030469_010 Hb_000172_730 Hb_000172_730 Hb_000645_100--Hb_000172_730 Hb_110562_020 Hb_110562_020 Hb_000645_100--Hb_110562_020 Hb_000002_130 Hb_000002_130 Hb_000645_100--Hb_000002_130 Hb_001405_260 Hb_001405_260 Hb_005643_020--Hb_001405_260 Hb_005643_020--Hb_005588_010 Hb_000522_120 Hb_000522_120 Hb_005643_020--Hb_000522_120 Hb_005648_030 Hb_005648_030 Hb_005643_020--Hb_005648_030 Hb_044026_010 Hb_044026_010 Hb_005643_020--Hb_044026_010 Hb_002193_050 Hb_002193_050 Hb_005643_020--Hb_002193_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 10.5708 0.415717 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.5129 0 0 0.189604 0.580692

CAGE analysis