Hb_002016_160

Information

Type -
Description -
Location Contig2016: 152286-154435
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20513: 148833-151411
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002016_160 0.0 - - -
2 Hb_008195_040 0.2405663504 - - hypothetical protein VITISV_033788 [Vitis vinifera]
3 Hb_098988_010 0.2895524326 - - hypothetical protein JCGZ_18539 [Jatropha curcas]
4 Hb_187136_010 0.2946917526 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
5 Hb_016859_010 0.3077932728 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_107500_010 0.3160375091 - - -
7 Hb_001268_100 0.3186282002 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
8 Hb_009449_010 0.3507134215 - - Serine/threonine-protein kinase HT1 [Gossypium arboreum]
9 Hb_011360_030 0.359785724 - - zinc finger protein, putative [Ricinus communis]
10 Hb_022137_040 0.3670969952 - - PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]
11 Hb_017647_020 0.3690843774 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
12 Hb_116293_020 0.3766291541 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
13 Hb_005520_020 0.3773018214 - - hypothetical protein EUGRSUZ_G03336 [Eucalyptus grandis]
14 Hb_000167_020 0.382565189 - - -
15 Hb_054865_080 0.3864770676 - - PREDICTED: uncharacterized protein LOC105642789 [Jatropha curcas]
16 Hb_006857_030 0.3885244931 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_000025_550 0.3893233237 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001904_040 0.389828137 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
19 Hb_002211_040 0.3924304896 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
20 Hb_049415_010 0.398476188 - - -

Gene co-expression network

sample Hb_002016_160 Hb_002016_160 Hb_008195_040 Hb_008195_040 Hb_002016_160--Hb_008195_040 Hb_098988_010 Hb_098988_010 Hb_002016_160--Hb_098988_010 Hb_187136_010 Hb_187136_010 Hb_002016_160--Hb_187136_010 Hb_016859_010 Hb_016859_010 Hb_002016_160--Hb_016859_010 Hb_107500_010 Hb_107500_010 Hb_002016_160--Hb_107500_010 Hb_001268_100 Hb_001268_100 Hb_002016_160--Hb_001268_100 Hb_000625_110 Hb_000625_110 Hb_008195_040--Hb_000625_110 Hb_005725_190 Hb_005725_190 Hb_008195_040--Hb_005725_190 Hb_006857_030 Hb_006857_030 Hb_008195_040--Hb_006857_030 Hb_002417_030 Hb_002417_030 Hb_008195_040--Hb_002417_030 Hb_002401_010 Hb_002401_010 Hb_008195_040--Hb_002401_010 Hb_098988_010--Hb_187136_010 Hb_098988_010--Hb_016859_010 Hb_009449_010 Hb_009449_010 Hb_098988_010--Hb_009449_010 Hb_116293_020 Hb_116293_020 Hb_098988_010--Hb_116293_020 Hb_005520_020 Hb_005520_020 Hb_098988_010--Hb_005520_020 Hb_017647_020 Hb_017647_020 Hb_098988_010--Hb_017647_020 Hb_187136_010--Hb_016859_010 Hb_187136_010--Hb_009449_010 Hb_187136_010--Hb_116293_020 Hb_187136_010--Hb_005520_020 Hb_049415_010 Hb_049415_010 Hb_187136_010--Hb_049415_010 Hb_016859_010--Hb_009449_010 Hb_016859_010--Hb_116293_020 Hb_016859_010--Hb_005520_020 Hb_016859_010--Hb_049415_010 Hb_107500_010--Hb_001268_100 Hb_000853_380 Hb_000853_380 Hb_107500_010--Hb_000853_380 Hb_000457_040 Hb_000457_040 Hb_107500_010--Hb_000457_040 Hb_004724_350 Hb_004724_350 Hb_107500_010--Hb_004724_350 Hb_134310_030 Hb_134310_030 Hb_107500_010--Hb_134310_030 Hb_001268_100--Hb_134310_030 Hb_122873_010 Hb_122873_010 Hb_001268_100--Hb_122873_010 Hb_001268_100--Hb_004724_350 Hb_002257_020 Hb_002257_020 Hb_001268_100--Hb_002257_020 Hb_001268_100--Hb_000853_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0749783 0.261099 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.1391 0 0 0

CAGE analysis