Hb_187136_010

Information

Type -
Description -
Location Contig187136: 159-548
Sequence    

Annotation

kegg
ID rcu:RCOM_0495320
description Auxin-induced in root cultures protein 12 precursor, putative
nr
ID XP_002532005.1
description Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
swissprot
ID Q9FGK4
description Cytochrome b561 and DOMON domain-containing protein At5g47530 OS=Arabidopsis thaliana GN=At5g47530 PE=2 SV=1
trembl
ID B9T186
description Auxin-induced in root cultures protein 12, putative OS=Ricinus communis GN=RCOM_0495320 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_187136_010 0.0 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
2 Hb_098988_010 0.049527307 - - hypothetical protein JCGZ_18539 [Jatropha curcas]
3 Hb_016859_010 0.0517328773 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_009449_010 0.1498919886 - - Serine/threonine-protein kinase HT1 [Gossypium arboreum]
5 Hb_116293_020 0.1950762198 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
6 Hb_005520_020 0.1961812428 - - hypothetical protein EUGRSUZ_G03336 [Eucalyptus grandis]
7 Hb_049415_010 0.229689593 - - -
8 Hb_017647_020 0.2940998827 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
9 Hb_002016_160 0.2946917526 - - -
10 Hb_167452_010 0.319855598 - - hypothetical protein JCGZ_03682 [Jatropha curcas]
11 Hb_054865_080 0.3215158045 - - PREDICTED: uncharacterized protein LOC105642789 [Jatropha curcas]
12 Hb_002257_020 0.3221171783 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
13 Hb_012725_010 0.3234532981 - - -
14 Hb_002211_040 0.3258099137 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
15 Hb_002401_010 0.3303874158 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
16 Hb_001268_100 0.3315779855 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
17 Hb_002063_030 0.3416850429 - - -
18 Hb_008195_040 0.348283672 - - hypothetical protein VITISV_033788 [Vitis vinifera]
19 Hb_001638_010 0.349926311 - - -
20 Hb_122873_010 0.352407629 - - -

Gene co-expression network

sample Hb_187136_010 Hb_187136_010 Hb_098988_010 Hb_098988_010 Hb_187136_010--Hb_098988_010 Hb_016859_010 Hb_016859_010 Hb_187136_010--Hb_016859_010 Hb_009449_010 Hb_009449_010 Hb_187136_010--Hb_009449_010 Hb_116293_020 Hb_116293_020 Hb_187136_010--Hb_116293_020 Hb_005520_020 Hb_005520_020 Hb_187136_010--Hb_005520_020 Hb_049415_010 Hb_049415_010 Hb_187136_010--Hb_049415_010 Hb_098988_010--Hb_016859_010 Hb_098988_010--Hb_009449_010 Hb_098988_010--Hb_116293_020 Hb_098988_010--Hb_005520_020 Hb_017647_020 Hb_017647_020 Hb_098988_010--Hb_017647_020 Hb_016859_010--Hb_009449_010 Hb_016859_010--Hb_116293_020 Hb_016859_010--Hb_005520_020 Hb_016859_010--Hb_049415_010 Hb_009449_010--Hb_116293_020 Hb_009449_010--Hb_005520_020 Hb_009449_010--Hb_049415_010 Hb_012725_010 Hb_012725_010 Hb_009449_010--Hb_012725_010 Hb_116293_020--Hb_005520_020 Hb_116293_020--Hb_049415_010 Hb_116293_020--Hb_012725_010 Hb_005520_020--Hb_049415_010 Hb_005520_020--Hb_012725_010 Hb_049415_010--Hb_012725_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.23291 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.164415 0 0 0

CAGE analysis