Hb_098988_010

Information

Type -
Description -
Location Contig98988: 811-1020
Sequence    

Annotation

kegg
ID pop:POPTR_0008s03990g
description POPTRDRAFT_765296; hypothetical protein
nr
ID KDP45097.1
description hypothetical protein JCGZ_18539 [Jatropha curcas]
swissprot
ID Q8VX13
description Protein disulfide isomerase-like 1-3 OS=Arabidopsis thaliana GN=PDIL1-3 PE=2 SV=1
trembl
ID A0A067L9K0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18539 PE=4 SV=1
Gene Ontology
ID GO:0005774
description protein pdi-like 1-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_098988_010 0.0 - - hypothetical protein JCGZ_18539 [Jatropha curcas]
2 Hb_187136_010 0.049527307 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
3 Hb_016859_010 0.1011649515 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_009449_010 0.1988980743 - - Serine/threonine-protein kinase HT1 [Gossypium arboreum]
5 Hb_116293_020 0.2437807569 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
6 Hb_005520_020 0.2448775559 - - hypothetical protein EUGRSUZ_G03336 [Eucalyptus grandis]
7 Hb_017647_020 0.2463770916 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
8 Hb_049415_010 0.2781167096 - - -
9 Hb_002016_160 0.2895524326 - - -
10 Hb_002401_010 0.30917204 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
11 Hb_002063_030 0.3104924814 - - -
12 Hb_002211_040 0.3132298311 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
13 Hb_008195_040 0.324015551 - - hypothetical protein VITISV_033788 [Vitis vinifera]
14 Hb_002257_020 0.3325024032 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
15 Hb_054865_080 0.3328041558 - - PREDICTED: uncharacterized protein LOC105642789 [Jatropha curcas]
16 Hb_001902_150 0.3344132861 - - PREDICTED: cytokinin hydroxylase-like [Jatropha curcas]
17 Hb_167452_010 0.3353283678 - - hypothetical protein JCGZ_03682 [Jatropha curcas]
18 Hb_001638_010 0.335843469 - - -
19 Hb_000608_210 0.3409765071 - - PREDICTED: leucine-rich repeat receptor-like protein FASCIATED EAR2 [Gossypium raimondii]
20 Hb_001268_100 0.3513254138 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]

Gene co-expression network

sample Hb_098988_010 Hb_098988_010 Hb_187136_010 Hb_187136_010 Hb_098988_010--Hb_187136_010 Hb_016859_010 Hb_016859_010 Hb_098988_010--Hb_016859_010 Hb_009449_010 Hb_009449_010 Hb_098988_010--Hb_009449_010 Hb_116293_020 Hb_116293_020 Hb_098988_010--Hb_116293_020 Hb_005520_020 Hb_005520_020 Hb_098988_010--Hb_005520_020 Hb_017647_020 Hb_017647_020 Hb_098988_010--Hb_017647_020 Hb_187136_010--Hb_016859_010 Hb_187136_010--Hb_009449_010 Hb_187136_010--Hb_116293_020 Hb_187136_010--Hb_005520_020 Hb_049415_010 Hb_049415_010 Hb_187136_010--Hb_049415_010 Hb_016859_010--Hb_009449_010 Hb_016859_010--Hb_116293_020 Hb_016859_010--Hb_005520_020 Hb_016859_010--Hb_049415_010 Hb_009449_010--Hb_116293_020 Hb_009449_010--Hb_005520_020 Hb_009449_010--Hb_049415_010 Hb_012725_010 Hb_012725_010 Hb_009449_010--Hb_012725_010 Hb_116293_020--Hb_005520_020 Hb_116293_020--Hb_049415_010 Hb_116293_020--Hb_012725_010 Hb_005520_020--Hb_049415_010 Hb_005520_020--Hb_012725_010 Hb_001985_010 Hb_001985_010 Hb_017647_020--Hb_001985_010 Hb_000004_150 Hb_000004_150 Hb_017647_020--Hb_000004_150 Hb_000007_170 Hb_000007_170 Hb_017647_020--Hb_000007_170 Hb_000010_280 Hb_000010_280 Hb_017647_020--Hb_000010_280 Hb_000022_220 Hb_000022_220 Hb_017647_020--Hb_000022_220 Hb_000045_120 Hb_000045_120 Hb_017647_020--Hb_000045_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.71301 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.951337 0 0 0

CAGE analysis