Hb_009449_010

Information

Type -
Description -
Location Contig9449: 2522-4385
Sequence    

Annotation

kegg
ID vvi:100268039
description serine/threonine-protein kinase HT1
nr
ID KHG12826.1
description Serine/threonine-protein kinase HT1 [Gossypium arboreum]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID A0A0B0NP50
description Serine/threonine-protein kinase HT1 OS=Gossypium arboreum GN=F383_00371 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase ht1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009449_010 0.0 - - Serine/threonine-protein kinase HT1 [Gossypium arboreum]
2 Hb_116293_020 0.0456562562 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
3 Hb_005520_020 0.0467757632 - - hypothetical protein EUGRSUZ_G03336 [Eucalyptus grandis]
4 Hb_049415_010 0.0807934185 - - -
5 Hb_016859_010 0.0984238256 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_187136_010 0.1498919886 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
7 Hb_012725_010 0.1767829973 - - -
8 Hb_098988_010 0.1988980743 - - hypothetical protein JCGZ_18539 [Jatropha curcas]
9 Hb_122873_010 0.2853237547 - - -
10 Hb_001268_100 0.3095306642 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
11 Hb_167452_010 0.3138904866 - - hypothetical protein JCGZ_03682 [Jatropha curcas]
12 Hb_054865_080 0.328412429 - - PREDICTED: uncharacterized protein LOC105642789 [Jatropha curcas]
13 Hb_004724_350 0.3302476949 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002257_020 0.3316619161 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
15 Hb_000152_310 0.3399884651 - - -
16 Hb_002311_170 0.3457523298 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Eucalyptus grandis]
17 Hb_107500_010 0.3462868788 - - -
18 Hb_002016_160 0.3507134215 - - -
19 Hb_009813_080 0.3557880756 - - hypothetical protein CISIN_1g045991mg [Citrus sinensis]
20 Hb_038098_010 0.3596437493 - - PREDICTED: uncharacterized protein LOC105793140 [Gossypium raimondii]

Gene co-expression network

sample Hb_009449_010 Hb_009449_010 Hb_116293_020 Hb_116293_020 Hb_009449_010--Hb_116293_020 Hb_005520_020 Hb_005520_020 Hb_009449_010--Hb_005520_020 Hb_049415_010 Hb_049415_010 Hb_009449_010--Hb_049415_010 Hb_016859_010 Hb_016859_010 Hb_009449_010--Hb_016859_010 Hb_187136_010 Hb_187136_010 Hb_009449_010--Hb_187136_010 Hb_012725_010 Hb_012725_010 Hb_009449_010--Hb_012725_010 Hb_116293_020--Hb_005520_020 Hb_116293_020--Hb_049415_010 Hb_116293_020--Hb_012725_010 Hb_116293_020--Hb_016859_010 Hb_116293_020--Hb_187136_010 Hb_005520_020--Hb_049415_010 Hb_005520_020--Hb_012725_010 Hb_005520_020--Hb_016859_010 Hb_005520_020--Hb_187136_010 Hb_049415_010--Hb_012725_010 Hb_049415_010--Hb_016859_010 Hb_049415_010--Hb_187136_010 Hb_016859_010--Hb_187136_010 Hb_098988_010 Hb_098988_010 Hb_016859_010--Hb_098988_010 Hb_187136_010--Hb_098988_010 Hb_004724_350 Hb_004724_350 Hb_012725_010--Hb_004724_350 Hb_012725_010--Hb_016859_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0796062 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.114474 0 0 0

CAGE analysis