Hb_012725_010

Information

Type -
Description -
Location Contig12725: 467-3018
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012725_010 0.0 - - -
2 Hb_049415_010 0.0966232357 - - -
3 Hb_005520_020 0.1304847374 - - hypothetical protein EUGRSUZ_G03336 [Eucalyptus grandis]
4 Hb_116293_020 0.1315962361 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
5 Hb_009449_010 0.1767829973 - - Serine/threonine-protein kinase HT1 [Gossypium arboreum]
6 Hb_004724_350 0.268816131 - - conserved hypothetical protein [Ricinus communis]
7 Hb_016859_010 0.2733567325 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_000152_310 0.2770009608 - - -
9 Hb_122873_010 0.2895569426 - - -
10 Hb_002391_330 0.3112348268 - - conserved hypothetical protein [Ricinus communis]
11 Hb_038098_010 0.3183671351 - - PREDICTED: uncharacterized protein LOC105793140 [Gossypium raimondii]
12 Hb_187136_010 0.3234532981 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
13 Hb_001401_100 0.3252294797 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
14 Hb_003158_020 0.3345345651 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
15 Hb_011628_020 0.3395768441 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000016_070 0.344534596 transcription factor TF Family: M-type PREDICTED: MADS-box protein SOC1-like, partial [Nicotiana sylvestris]
17 Hb_000019_020 0.344534596 - - hypothetical protein POPTR_0017s08820g, partial [Populus trichocarpa]
18 Hb_000019_160 0.344534596 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
19 Hb_000029_230 0.344534596 - - hypothetical protein ARALYDRAFT_496947 [Arabidopsis lyrata subsp. lyrata]
20 Hb_000032_170 0.344534596 - - -

Gene co-expression network

sample Hb_012725_010 Hb_012725_010 Hb_049415_010 Hb_049415_010 Hb_012725_010--Hb_049415_010 Hb_005520_020 Hb_005520_020 Hb_012725_010--Hb_005520_020 Hb_116293_020 Hb_116293_020 Hb_012725_010--Hb_116293_020 Hb_009449_010 Hb_009449_010 Hb_012725_010--Hb_009449_010 Hb_004724_350 Hb_004724_350 Hb_012725_010--Hb_004724_350 Hb_016859_010 Hb_016859_010 Hb_012725_010--Hb_016859_010 Hb_049415_010--Hb_005520_020 Hb_049415_010--Hb_116293_020 Hb_049415_010--Hb_009449_010 Hb_049415_010--Hb_016859_010 Hb_187136_010 Hb_187136_010 Hb_049415_010--Hb_187136_010 Hb_005520_020--Hb_116293_020 Hb_005520_020--Hb_009449_010 Hb_005520_020--Hb_016859_010 Hb_005520_020--Hb_187136_010 Hb_116293_020--Hb_009449_010 Hb_116293_020--Hb_016859_010 Hb_116293_020--Hb_187136_010 Hb_009449_010--Hb_016859_010 Hb_009449_010--Hb_187136_010 Hb_122873_010 Hb_122873_010 Hb_004724_350--Hb_122873_010 Hb_107500_010 Hb_107500_010 Hb_004724_350--Hb_107500_010 Hb_001268_100 Hb_001268_100 Hb_004724_350--Hb_001268_100 Hb_038098_010 Hb_038098_010 Hb_004724_350--Hb_038098_010 Hb_004724_350--Hb_049415_010 Hb_016859_010--Hb_187136_010 Hb_098988_010 Hb_098988_010 Hb_016859_010--Hb_098988_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0280249 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.100469 0 0 0

CAGE analysis