Hb_005520_020

Information

Type -
Description -
Location Contig5520: 19436-22291
Sequence    

Annotation

kegg
ID fve:101306901
description probable leucine-rich repeat receptor-like protein kinase At1g35710-like
nr
ID KCW66045.1
description hypothetical protein EUGRSUZ_G03336 [Eucalyptus grandis]
swissprot
ID A7PW81
description Polygalacturonase inhibitor OS=Vitis vinifera GN=pgip PE=1 SV=1
trembl
ID K4AYE1
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc01g087510.1 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005520_020 0.0 - - hypothetical protein EUGRSUZ_G03336 [Eucalyptus grandis]
2 Hb_116293_020 0.0011204474 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
3 Hb_049415_010 0.0340697042 - - -
4 Hb_009449_010 0.0467757632 - - Serine/threonine-protein kinase HT1 [Gossypium arboreum]
5 Hb_012725_010 0.1304847374 - - -
6 Hb_016859_010 0.1449590402 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_187136_010 0.1961812428 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
8 Hb_098988_010 0.2448775559 - - hypothetical protein JCGZ_18539 [Jatropha curcas]
9 Hb_122873_010 0.276426797 - - -
10 Hb_004724_350 0.3064512861 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001268_100 0.3157715694 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
12 Hb_000152_310 0.3161437364 - - -
13 Hb_167452_010 0.3250459053 - - hypothetical protein JCGZ_03682 [Jatropha curcas]
14 Hb_038098_010 0.3415344544 - - PREDICTED: uncharacterized protein LOC105793140 [Gossypium raimondii]
15 Hb_054865_080 0.3427559965 - - PREDICTED: uncharacterized protein LOC105642789 [Jatropha curcas]
16 Hb_002311_170 0.3440075132 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Eucalyptus grandis]
17 Hb_107500_010 0.3447064092 - - -
18 Hb_002257_020 0.3466354962 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
19 Hb_009813_080 0.3523231323 - - hypothetical protein CISIN_1g045991mg [Citrus sinensis]
20 Hb_005048_060 0.3618726672 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005520_020 Hb_005520_020 Hb_116293_020 Hb_116293_020 Hb_005520_020--Hb_116293_020 Hb_049415_010 Hb_049415_010 Hb_005520_020--Hb_049415_010 Hb_009449_010 Hb_009449_010 Hb_005520_020--Hb_009449_010 Hb_012725_010 Hb_012725_010 Hb_005520_020--Hb_012725_010 Hb_016859_010 Hb_016859_010 Hb_005520_020--Hb_016859_010 Hb_187136_010 Hb_187136_010 Hb_005520_020--Hb_187136_010 Hb_116293_020--Hb_049415_010 Hb_116293_020--Hb_009449_010 Hb_116293_020--Hb_012725_010 Hb_116293_020--Hb_016859_010 Hb_116293_020--Hb_187136_010 Hb_049415_010--Hb_009449_010 Hb_049415_010--Hb_012725_010 Hb_049415_010--Hb_016859_010 Hb_049415_010--Hb_187136_010 Hb_009449_010--Hb_016859_010 Hb_009449_010--Hb_187136_010 Hb_009449_010--Hb_012725_010 Hb_004724_350 Hb_004724_350 Hb_012725_010--Hb_004724_350 Hb_012725_010--Hb_016859_010 Hb_016859_010--Hb_187136_010 Hb_098988_010 Hb_098988_010 Hb_016859_010--Hb_098988_010 Hb_187136_010--Hb_098988_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00763711 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0137774 0 0 0

CAGE analysis