Hb_016859_010

Information

Type -
Description -
Location Contig16859: 812-12359
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022673mg
description hypothetical protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P20825
description Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID M5X787
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016859_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_187136_010 0.0517328773 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
3 Hb_009449_010 0.0984238256 - - Serine/threonine-protein kinase HT1 [Gossypium arboreum]
4 Hb_098988_010 0.1011649515 - - hypothetical protein JCGZ_18539 [Jatropha curcas]
5 Hb_116293_020 0.1438472046 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
6 Hb_005520_020 0.1449590402 - - hypothetical protein EUGRSUZ_G03336 [Eucalyptus grandis]
7 Hb_049415_010 0.1786966905 - - -
8 Hb_012725_010 0.2733567325 - - -
9 Hb_002016_160 0.3077932728 - - -
10 Hb_167452_010 0.3105006835 - - hypothetical protein JCGZ_03682 [Jatropha curcas]
11 Hb_054865_080 0.3167744888 - - PREDICTED: uncharacterized protein LOC105642789 [Jatropha curcas]
12 Hb_001268_100 0.3170201204 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
13 Hb_002257_020 0.3183474275 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
14 Hb_122873_010 0.3239231655 - - -
15 Hb_017647_020 0.3434977136 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
16 Hb_002211_040 0.3452080247 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
17 Hb_002401_010 0.3576109148 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
18 Hb_002311_170 0.366828067 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Eucalyptus grandis]
19 Hb_107500_010 0.3670074088 - - -
20 Hb_001638_010 0.3702025032 - - -

Gene co-expression network

sample Hb_016859_010 Hb_016859_010 Hb_187136_010 Hb_187136_010 Hb_016859_010--Hb_187136_010 Hb_009449_010 Hb_009449_010 Hb_016859_010--Hb_009449_010 Hb_098988_010 Hb_098988_010 Hb_016859_010--Hb_098988_010 Hb_116293_020 Hb_116293_020 Hb_016859_010--Hb_116293_020 Hb_005520_020 Hb_005520_020 Hb_016859_010--Hb_005520_020 Hb_049415_010 Hb_049415_010 Hb_016859_010--Hb_049415_010 Hb_187136_010--Hb_098988_010 Hb_187136_010--Hb_009449_010 Hb_187136_010--Hb_116293_020 Hb_187136_010--Hb_005520_020 Hb_187136_010--Hb_049415_010 Hb_009449_010--Hb_116293_020 Hb_009449_010--Hb_005520_020 Hb_009449_010--Hb_049415_010 Hb_012725_010 Hb_012725_010 Hb_009449_010--Hb_012725_010 Hb_098988_010--Hb_009449_010 Hb_098988_010--Hb_116293_020 Hb_098988_010--Hb_005520_020 Hb_017647_020 Hb_017647_020 Hb_098988_010--Hb_017647_020 Hb_116293_020--Hb_005520_020 Hb_116293_020--Hb_049415_010 Hb_116293_020--Hb_012725_010 Hb_005520_020--Hb_049415_010 Hb_005520_020--Hb_012725_010 Hb_049415_010--Hb_012725_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0133916 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0120829 0 0 0

CAGE analysis