Hb_038098_010

Information

Type -
Description -
Location Contig38098: 4869-6188
Sequence    

Annotation

kegg
ID cmo:103503101
description uncharacterized LOC103503101
nr
ID XP_012477521.1
description PREDICTED: uncharacterized protein LOC105793140 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NVA1
description E3 ubiquitin-protein ligase RBBP6 OS=Gossypium arboreum GN=F383_23315 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_038098_010 0.0 - - PREDICTED: uncharacterized protein LOC105793140 [Gossypium raimondii]
2 Hb_122873_010 0.1025041522 - - -
3 Hb_114435_010 0.1419031404 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
4 Hb_002257_020 0.2465150695 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
5 Hb_004724_350 0.2920170468 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000122_240 0.307988376 - - monovalent cation:proton antiporter, putative [Ricinus communis]
7 Hb_012725_010 0.3183671351 - - -
8 Hb_007407_030 0.3200757935 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
9 Hb_127120_010 0.3201278103 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
10 Hb_000976_220 0.3201419044 - - PREDICTED: protein ALTERED XYLOGLUCAN 4-like [Jatropha curcas]
11 Hb_006684_020 0.3231764928 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_026113_020 0.3241077026 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_000173_300 0.3274703791 - - PREDICTED: uncharacterized protein LOC105631894 [Jatropha curcas]
14 Hb_001045_100 0.3278010064 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
15 Hb_049415_010 0.3313148624 - - -
16 Hb_005520_020 0.3415344544 - - hypothetical protein EUGRSUZ_G03336 [Eucalyptus grandis]
17 Hb_116293_020 0.3419152034 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
18 Hb_002249_060 0.3454840759 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_001268_100 0.3470702961 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
20 Hb_000260_150 0.350528759 - - hypothetical protein POPTR_0344s002001g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_038098_010 Hb_038098_010 Hb_122873_010 Hb_122873_010 Hb_038098_010--Hb_122873_010 Hb_114435_010 Hb_114435_010 Hb_038098_010--Hb_114435_010 Hb_002257_020 Hb_002257_020 Hb_038098_010--Hb_002257_020 Hb_004724_350 Hb_004724_350 Hb_038098_010--Hb_004724_350 Hb_000122_240 Hb_000122_240 Hb_038098_010--Hb_000122_240 Hb_012725_010 Hb_012725_010 Hb_038098_010--Hb_012725_010 Hb_122873_010--Hb_114435_010 Hb_122873_010--Hb_002257_020 Hb_049415_010 Hb_049415_010 Hb_122873_010--Hb_049415_010 Hb_005520_020 Hb_005520_020 Hb_122873_010--Hb_005520_020 Hb_116293_020 Hb_116293_020 Hb_122873_010--Hb_116293_020 Hb_114435_010--Hb_002257_020 Hb_114435_010--Hb_000122_240 Hb_002608_020 Hb_002608_020 Hb_114435_010--Hb_002608_020 Hb_000260_150 Hb_000260_150 Hb_114435_010--Hb_000260_150 Hb_002257_020--Hb_002608_020 Hb_002257_020--Hb_000122_240 Hb_001437_020 Hb_001437_020 Hb_002257_020--Hb_001437_020 Hb_004724_350--Hb_012725_010 Hb_004724_350--Hb_122873_010 Hb_107500_010 Hb_107500_010 Hb_004724_350--Hb_107500_010 Hb_001268_100 Hb_001268_100 Hb_004724_350--Hb_001268_100 Hb_004724_350--Hb_049415_010 Hb_000122_240--Hb_002608_020 Hb_000122_240--Hb_122873_010 Hb_000122_240--Hb_001437_020 Hb_012725_010--Hb_049415_010 Hb_012725_010--Hb_005520_020 Hb_012725_010--Hb_116293_020 Hb_009449_010 Hb_009449_010 Hb_012725_010--Hb_009449_010 Hb_016859_010 Hb_016859_010 Hb_012725_010--Hb_016859_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0193143 0 0 0 0.0206189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0694308 0 0 0

CAGE analysis