Hb_002608_020

Information

Type transcription factor
Description TF Family: MYB
Location Contig2608: 61908-64748
Sequence    

Annotation

kegg
ID tcc:TCM_016901
description Myb domain protein 21
nr
ID XP_012072414.1
description PREDICTED: myb-related protein 305 [Jatropha curcas]
swissprot
ID P81396
description Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1
trembl
ID A0A067LD71
description MYB family protein OS=Jatropha curcas GN=JCGZ_10271 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein 305-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002608_020 0.0 transcription factor TF Family: MYB PREDICTED: myb-related protein 305 [Jatropha curcas]
2 Hb_002257_020 0.1466089862 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
3 Hb_000122_240 0.1467304112 - - monovalent cation:proton antiporter, putative [Ricinus communis]
4 Hb_001437_020 0.2171945991 - - PREDICTED: uncharacterized protein LOC105628060 isoform X2 [Jatropha curcas]
5 Hb_114435_010 0.2261220108 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_001638_010 0.2910713841 - - -
7 Hb_122873_010 0.3050254391 - - -
8 Hb_000260_150 0.3255741239 - - hypothetical protein POPTR_0344s002001g, partial [Populus trichocarpa]
9 Hb_038098_010 0.3561568896 - - PREDICTED: uncharacterized protein LOC105793140 [Gossypium raimondii]
10 Hb_001854_010 0.3611298247 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
11 Hb_002284_110 0.361674754 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic isoform X2 [Solanum lycopersicum]
12 Hb_000486_050 0.3652589476 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
13 Hb_000243_100 0.3673931185 - - Purple acid phosphatase precursor, putative [Ricinus communis]
14 Hb_004162_110 0.3673985548 - - hypothetical protein JCGZ_05404 [Jatropha curcas]
15 Hb_002800_040 0.3674680252 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_011362_030 0.3763198125 - - polyprotein [Oryza australiensis]
17 Hb_000960_070 0.3778405449 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
18 Hb_012733_080 0.3786520814 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_006183_010 0.3788811955 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_080147_010 0.3792097287 - - -

Gene co-expression network

sample Hb_002608_020 Hb_002608_020 Hb_002257_020 Hb_002257_020 Hb_002608_020--Hb_002257_020 Hb_000122_240 Hb_000122_240 Hb_002608_020--Hb_000122_240 Hb_001437_020 Hb_001437_020 Hb_002608_020--Hb_001437_020 Hb_114435_010 Hb_114435_010 Hb_002608_020--Hb_114435_010 Hb_001638_010 Hb_001638_010 Hb_002608_020--Hb_001638_010 Hb_122873_010 Hb_122873_010 Hb_002608_020--Hb_122873_010 Hb_002257_020--Hb_114435_010 Hb_002257_020--Hb_122873_010 Hb_002257_020--Hb_000122_240 Hb_038098_010 Hb_038098_010 Hb_002257_020--Hb_038098_010 Hb_002257_020--Hb_001437_020 Hb_000122_240--Hb_114435_010 Hb_000122_240--Hb_122873_010 Hb_000122_240--Hb_038098_010 Hb_000122_240--Hb_001437_020 Hb_000960_070 Hb_000960_070 Hb_001437_020--Hb_000960_070 Hb_126907_010 Hb_126907_010 Hb_001437_020--Hb_126907_010 Hb_084611_010 Hb_084611_010 Hb_001437_020--Hb_084611_010 Hb_000014_140 Hb_000014_140 Hb_001437_020--Hb_000014_140 Hb_114435_010--Hb_122873_010 Hb_114435_010--Hb_038098_010 Hb_000260_150 Hb_000260_150 Hb_114435_010--Hb_000260_150 Hb_001638_010--Hb_000260_150 Hb_001638_010--Hb_002257_020 Hb_002401_010 Hb_002401_010 Hb_001638_010--Hb_002401_010 Hb_001638_010--Hb_001437_020 Hb_167452_010 Hb_167452_010 Hb_001638_010--Hb_167452_010 Hb_122873_010--Hb_038098_010 Hb_049415_010 Hb_049415_010 Hb_122873_010--Hb_049415_010 Hb_005520_020 Hb_005520_020 Hb_122873_010--Hb_005520_020 Hb_116293_020 Hb_116293_020 Hb_122873_010--Hb_116293_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.352354 0 0 0 0.214425
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.175677 0 0 0

CAGE analysis