Hb_114435_010

Information

Type -
Description -
Location Contig114435: 2110-3489
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa025968mg
description hypothetical protein
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID M5X4P9
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025968mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114435_010 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_122873_010 0.1381140165 - - -
3 Hb_038098_010 0.1419031404 - - PREDICTED: uncharacterized protein LOC105793140 [Gossypium raimondii]
4 Hb_002257_020 0.1509653127 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
5 Hb_000122_240 0.1719513788 - - monovalent cation:proton antiporter, putative [Ricinus communis]
6 Hb_002608_020 0.2261220108 transcription factor TF Family: MYB PREDICTED: myb-related protein 305 [Jatropha curcas]
7 Hb_000260_150 0.305580779 - - hypothetical protein POPTR_0344s002001g, partial [Populus trichocarpa]
8 Hb_001268_100 0.3481349168 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
9 Hb_004724_350 0.372088413 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001437_020 0.3790779982 - - PREDICTED: uncharacterized protein LOC105628060 isoform X2 [Jatropha curcas]
11 Hb_000173_300 0.3802723045 - - PREDICTED: uncharacterized protein LOC105631894 [Jatropha curcas]
12 Hb_026113_020 0.3805976179 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_006684_020 0.3807420253 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_000976_220 0.3814139717 - - PREDICTED: protein ALTERED XYLOGLUCAN 4-like [Jatropha curcas]
15 Hb_127120_010 0.3814179092 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
16 Hb_007407_030 0.3814325138 - - hypothetical protein JCGZ_23510 [Jatropha curcas]
17 Hb_000529_120 0.3844174651 - - PREDICTED: uncharacterized protein LOC105641745 [Jatropha curcas]
18 Hb_116293_020 0.3876707676 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
19 Hb_005520_020 0.3876707707 - - hypothetical protein EUGRSUZ_G03336 [Eucalyptus grandis]
20 Hb_007426_240 0.3879268119 - - -

Gene co-expression network

sample Hb_114435_010 Hb_114435_010 Hb_122873_010 Hb_122873_010 Hb_114435_010--Hb_122873_010 Hb_038098_010 Hb_038098_010 Hb_114435_010--Hb_038098_010 Hb_002257_020 Hb_002257_020 Hb_114435_010--Hb_002257_020 Hb_000122_240 Hb_000122_240 Hb_114435_010--Hb_000122_240 Hb_002608_020 Hb_002608_020 Hb_114435_010--Hb_002608_020 Hb_000260_150 Hb_000260_150 Hb_114435_010--Hb_000260_150 Hb_122873_010--Hb_038098_010 Hb_122873_010--Hb_002257_020 Hb_049415_010 Hb_049415_010 Hb_122873_010--Hb_049415_010 Hb_005520_020 Hb_005520_020 Hb_122873_010--Hb_005520_020 Hb_116293_020 Hb_116293_020 Hb_122873_010--Hb_116293_020 Hb_038098_010--Hb_002257_020 Hb_004724_350 Hb_004724_350 Hb_038098_010--Hb_004724_350 Hb_038098_010--Hb_000122_240 Hb_012725_010 Hb_012725_010 Hb_038098_010--Hb_012725_010 Hb_002257_020--Hb_002608_020 Hb_002257_020--Hb_000122_240 Hb_001437_020 Hb_001437_020 Hb_002257_020--Hb_001437_020 Hb_000122_240--Hb_002608_020 Hb_000122_240--Hb_122873_010 Hb_000122_240--Hb_001437_020 Hb_002608_020--Hb_001437_020 Hb_001638_010 Hb_001638_010 Hb_002608_020--Hb_001638_010 Hb_002608_020--Hb_122873_010 Hb_006925_090 Hb_006925_090 Hb_000260_150--Hb_006925_090 Hb_000260_150--Hb_001638_010 Hb_011505_010 Hb_011505_010 Hb_000260_150--Hb_011505_010 Hb_000260_150--Hb_002257_020 Hb_167452_010 Hb_167452_010 Hb_000260_150--Hb_167452_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0164143 0 0 0 0.0169969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0295299 0 0 0

CAGE analysis