Hb_002257_020

Information

Type -
Description -
Location Contig2257: 61295-65945
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022673mg
description hypothetical protein
nr
ID XP_007220718.1
description hypothetical protein PRUPE_ppa022673mg [Prunus persica]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID M5X787
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002257_020 0.0 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
2 Hb_002608_020 0.1466089862 transcription factor TF Family: MYB PREDICTED: myb-related protein 305 [Jatropha curcas]
3 Hb_114435_010 0.1509653127 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
4 Hb_122873_010 0.1717980188 - - -
5 Hb_000122_240 0.2076965743 - - monovalent cation:proton antiporter, putative [Ricinus communis]
6 Hb_038098_010 0.2465150695 - - PREDICTED: uncharacterized protein LOC105793140 [Gossypium raimondii]
7 Hb_001437_020 0.2805708528 - - PREDICTED: uncharacterized protein LOC105628060 isoform X2 [Jatropha curcas]
8 Hb_000260_150 0.2875523142 - - hypothetical protein POPTR_0344s002001g, partial [Populus trichocarpa]
9 Hb_001638_010 0.2896377968 - - -
10 Hb_001268_100 0.3041921433 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
11 Hb_016859_010 0.3183474275 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_187136_010 0.3221171783 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
13 Hb_009449_010 0.3316619161 - - Serine/threonine-protein kinase HT1 [Gossypium arboreum]
14 Hb_098988_010 0.3325024032 - - hypothetical protein JCGZ_18539 [Jatropha curcas]
15 Hb_116293_020 0.3462194006 - - Uncharacterized protein TCM_043787 [Theobroma cacao]
16 Hb_005520_020 0.3466354962 - - hypothetical protein EUGRSUZ_G03336 [Eucalyptus grandis]
17 Hb_049415_010 0.3605149212 - - -
18 Hb_002284_110 0.390495716 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP18, chloroplastic isoform X2 [Solanum lycopersicum]
19 Hb_107500_010 0.3933294978 - - -
20 Hb_004724_350 0.398582881 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002257_020 Hb_002257_020 Hb_002608_020 Hb_002608_020 Hb_002257_020--Hb_002608_020 Hb_114435_010 Hb_114435_010 Hb_002257_020--Hb_114435_010 Hb_122873_010 Hb_122873_010 Hb_002257_020--Hb_122873_010 Hb_000122_240 Hb_000122_240 Hb_002257_020--Hb_000122_240 Hb_038098_010 Hb_038098_010 Hb_002257_020--Hb_038098_010 Hb_001437_020 Hb_001437_020 Hb_002257_020--Hb_001437_020 Hb_002608_020--Hb_000122_240 Hb_002608_020--Hb_001437_020 Hb_002608_020--Hb_114435_010 Hb_001638_010 Hb_001638_010 Hb_002608_020--Hb_001638_010 Hb_002608_020--Hb_122873_010 Hb_114435_010--Hb_122873_010 Hb_114435_010--Hb_038098_010 Hb_114435_010--Hb_000122_240 Hb_000260_150 Hb_000260_150 Hb_114435_010--Hb_000260_150 Hb_122873_010--Hb_038098_010 Hb_049415_010 Hb_049415_010 Hb_122873_010--Hb_049415_010 Hb_005520_020 Hb_005520_020 Hb_122873_010--Hb_005520_020 Hb_116293_020 Hb_116293_020 Hb_122873_010--Hb_116293_020 Hb_000122_240--Hb_122873_010 Hb_000122_240--Hb_038098_010 Hb_000122_240--Hb_001437_020 Hb_004724_350 Hb_004724_350 Hb_038098_010--Hb_004724_350 Hb_012725_010 Hb_012725_010 Hb_038098_010--Hb_012725_010 Hb_000960_070 Hb_000960_070 Hb_001437_020--Hb_000960_070 Hb_126907_010 Hb_126907_010 Hb_001437_020--Hb_126907_010 Hb_084611_010 Hb_084611_010 Hb_001437_020--Hb_084611_010 Hb_000014_140 Hb_000014_140 Hb_001437_020--Hb_000014_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00839349 0 0 0 0.00371055
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00757919 0 0 0

CAGE analysis