Hb_000482_060

Information

Type transcription factor
Description TF Family: LOB
Location Contig482: 54414-55115
Sequence    

Annotation

kegg
ID pop:POPTR_0018s05240g
description POPTRDRAFT_577952; hypothetical protein
nr
ID KDP34093.1
description hypothetical protein JCGZ_07664 [Jatropha curcas]
swissprot
ID Q9LRW1
description LOB domain-containing protein 22 OS=Arabidopsis thaliana GN=LBD22 PE=2 SV=1
trembl
ID A0A067KGF7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07664 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000482_060 0.0 transcription factor TF Family: LOB hypothetical protein JCGZ_07664 [Jatropha curcas]
2 Hb_000160_240 0.2474283864 - - PREDICTED: uncharacterized protein At1g66480 [Jatropha curcas]
3 Hb_003849_260 0.2698462212 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
4 Hb_003100_010 0.2738725563 - - PREDICTED: uncharacterized protein LOC101217345 [Cucumis sativus]
5 Hb_027428_030 0.2746318875 - - unnamed protein product [Coffea canephora]
6 Hb_000836_120 0.2788113382 - - syntaxin, putative [Ricinus communis]
7 Hb_002235_240 0.2822661679 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
8 Hb_001414_130 0.2892154122 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
9 Hb_001660_090 0.2908260845 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic-like [Jatropha curcas]
10 Hb_134310_030 0.2914463386 - - hypothetical protein JCGZ_10790 [Jatropha curcas]
11 Hb_010727_010 0.2928806827 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
12 Hb_001225_090 0.2933851073 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
13 Hb_001584_220 0.2952419775 - - galactinol synthase [Manihot esculenta]
14 Hb_002273_050 0.2952612477 - - PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
15 Hb_001183_010 0.2966039048 - - -
16 Hb_042175_010 0.2969623358 - - hypothetical protein CISIN_1g0016721mg, partial [Citrus sinensis]
17 Hb_000976_290 0.2989646026 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105646228 [Jatropha curcas]
18 Hb_002007_200 0.3007731909 - - -
19 Hb_129204_060 0.3016045897 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
20 Hb_005276_170 0.3037897977 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000482_060 Hb_000482_060 Hb_000160_240 Hb_000160_240 Hb_000482_060--Hb_000160_240 Hb_003849_260 Hb_003849_260 Hb_000482_060--Hb_003849_260 Hb_003100_010 Hb_003100_010 Hb_000482_060--Hb_003100_010 Hb_027428_030 Hb_027428_030 Hb_000482_060--Hb_027428_030 Hb_000836_120 Hb_000836_120 Hb_000482_060--Hb_000836_120 Hb_002235_240 Hb_002235_240 Hb_000482_060--Hb_002235_240 Hb_000976_290 Hb_000976_290 Hb_000160_240--Hb_000976_290 Hb_006026_010 Hb_006026_010 Hb_000160_240--Hb_006026_010 Hb_002273_080 Hb_002273_080 Hb_000160_240--Hb_002273_080 Hb_002686_280 Hb_002686_280 Hb_000160_240--Hb_002686_280 Hb_002273_050 Hb_002273_050 Hb_000160_240--Hb_002273_050 Hb_020805_170 Hb_020805_170 Hb_000160_240--Hb_020805_170 Hb_003849_260--Hb_002235_240 Hb_003849_260--Hb_000836_120 Hb_001141_360 Hb_001141_360 Hb_003849_260--Hb_001141_360 Hb_004800_190 Hb_004800_190 Hb_003849_260--Hb_004800_190 Hb_001584_220 Hb_001584_220 Hb_003849_260--Hb_001584_220 Hb_003849_260--Hb_002686_280 Hb_000142_020 Hb_000142_020 Hb_003100_010--Hb_000142_020 Hb_000625_110 Hb_000625_110 Hb_003100_010--Hb_000625_110 Hb_038758_010 Hb_038758_010 Hb_003100_010--Hb_038758_010 Hb_008695_030 Hb_008695_030 Hb_003100_010--Hb_008695_030 Hb_008453_070 Hb_008453_070 Hb_003100_010--Hb_008453_070 Hb_002063_030 Hb_002063_030 Hb_003100_010--Hb_002063_030 Hb_000173_480 Hb_000173_480 Hb_027428_030--Hb_000173_480 Hb_000567_040 Hb_000567_040 Hb_027428_030--Hb_000567_040 Hb_002417_060 Hb_002417_060 Hb_027428_030--Hb_002417_060 Hb_020730_010 Hb_020730_010 Hb_027428_030--Hb_020730_010 Hb_002626_040 Hb_002626_040 Hb_027428_030--Hb_002626_040 Hb_010795_060 Hb_010795_060 Hb_027428_030--Hb_010795_060 Hb_000836_120--Hb_002273_050 Hb_000836_120--Hb_002235_240 Hb_129204_060 Hb_129204_060 Hb_000836_120--Hb_129204_060 Hb_000215_410 Hb_000215_410 Hb_000836_120--Hb_000215_410 Hb_001638_040 Hb_001638_040 Hb_000836_120--Hb_001638_040 Hb_002235_240--Hb_129204_060 Hb_002235_240--Hb_000215_410 Hb_002235_240--Hb_001141_360 Hb_001863_150 Hb_001863_150 Hb_002235_240--Hb_001863_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0348985 0.312785 0.026392 0 0.0655062 0.0619057
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0805846 0.126702 0 0.077318 0

CAGE analysis